Non-Coding RNA Search

Ss1.1-rute2129b_o3.5

Sequence:


               
               GCACAACTAGGACACATCCCAGGACATTAACTGAAAGTTGAAACTTAATGAGTAGGAGGT
AACCCAATGAGGTGAATGATATCACAGCTTGATCTCCCCAGGACACTAACATCCTAAAAT
AGAGAACCCGCTGACTGAAGGCGCAGGTTATTACTTCAATTAGAAAATGCTTAAGGGTAG
CCTATGAAGTACTGAACCTGAATAGGCTGACACTGAGAAAATGCAGCAAGACAACACTTG
AAATTGCATAAGTAGGAAGTCACAATTACATTCATTGTCTTTTTCATACCATTTCAAAAA
AGGACTAACCACATGAATATTTTACTGTCTCCAAAAGATACCATCAGAAGCAAACTTAGT
ATGCAGTCATGCTTCTCCCTTAAACGGCTTCTGCCAAACAAAATAGTATAGCCAATTAAA
AAAAAGTCACAGGGGCCAATTTCCTGACTGGAGCCTGACATGCTTTTAATTATCTGTCTC
TATTCTAAGTCAATACCTAACCCCTCTAGGAAATTGAAGAATTTATATACAGGGTGATAG
CTTCTTCCCAGAGCTCCATTAAAGTGCTTCAGATCTGGCAATGTAGAAATGTTTGGTCCA
AGTTTTTCAACTGGTGGTTACCAAAGAGTTCATGAAACAGGTTTGTATGTAGCACCTTTC
ATGCAAGGCACTTGTAAGAGCCTAAAAATCACTGTGCATAGTACAGAATTGCAGCCACCT
CACAAGTGTTACGACCTGCACTGTCTTAACAGTTAATGTCAGGAAGTGAAAAAGATACTG
TACCAAATCTGGAGTTACAATGAGGAGTAATAATGTATACTAAATGACTTTTGTATTTTA
AGTTACTTTTTATGAGAAAAGTGGTGAATTTTTGTGTTTTCTTTTCCTCTTCACTTAGTC
CTGAGATGTATTTTTTTCTTTAAGCCTTGAATGAATAATACAGAAGGAGCCCATTTTATA
ATATAAACCTTGATGTACATGTTATTTGGACAACAATGAAAATGCCTTAAAAGGAATGCT
TATGGATAAAGTTGCACTTATAACACCCTTTTAAAAAACCTGATTTTAAATTGTCTTTTT
CTTTTCTACTAAGAGTTCTCTCTTTCAGTGTTTGCCATTGTACTTATAACTGTTATTAAA
TACCAAATCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACAACTAGGACACATCCCAGGACATTAACTGAAAGTTGAAACTTAATGAGTAGGAGGT
AACCCAATGAGGTGAATGATATCACAGCTTGATCTCCCCAGGACACTAACATCCTAAAAT
AGAGAACCCGCTGACTGAAGGCGCAGGTTATTACTTCAATTAGAAAATGCTTAAGGGTAG
CCTATGAAGTACTGAACCTGAATAGGCTGACACTGAGAAAATGCAGCAAGACAACACTTG
AAATTGCATAAGTAGGAAGTCACAATTACATTCATTGTCTTTTTCATACCATTTCAAAAA
AGGACTAACCACATGAATATTTTACTGTCTCCAAAAGATACCATCAGAAGCAAACTTAGT
ATGCAGTCATGCTTCTCCCTTAAACGGCTTCTGCCAAACAAAATAGTATAGCCAATTAAA
AAAAAGTCACAGGGGCCAATTTCCTGACTGGAGCCTGACATGCTTTTAATTATCTGTCTC
TATTCTAAGTCAATACCTAACCCCTCTAGGAAATTGAAGAATTTATATACAGGGTGATAG
CTTCTTCCCAGAGCTCCATTAAAGTGCTTCAGATCTGGCAATGTAGAAATGTTTGGTCCA
AGTTTTTCAACTGGTGGTTACCAAAGAGTTCATGAAACAGGTTTGTATGTAGCACCTTTC
ATGCAAGGCACTTGTAAGAGCCTAAAAATCACTGTGCATAGTACAGAATTGCAGCCACCT
CACAAGTGTTACGACCTGCACTGTCTTAACAGTTAATGTCAGGAAGTGAAAAAGATACTG
TACCAAATCTGGAGTTACAATGAGGAGTAATAATGTATACTAAATGACTTTTGTATTTTA
AGTTACTTTTTATGAGAAAAGTGGTGAATTTTTGTGTTTTCTTTTCCTCTTCACTTAGTC
CTGAGATGTATTTTTTTCTTTAAGCCTTGAATGAATAATACAGAAGGAGCCCATTTTATA
ATATAAACCTTGATGTACATGTTATTTGGACAACAATGAAAATGCCTTAAAAGGAATGCT
TATGGATAAAGTTGCACTTATAACACCCTTTTAAAAAACCTGATTTTAAATTGTCTTTTT
CTTTTCTACTAAGAGTTCTCTCTTTCAGTGTTTGCCATTGTACTTATAACTGTTATTAAA
TACCAAATCAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1152, gnl|bosTau2|chr11 (20361856-20360715)
               

               
               1-1152, gnl|Hg17|chr2 (55428060-55426881)
               

               
               1-1152, gnl|Mm7|chr11 (29461554-29462575)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1152, gnl|bosTau2|chr11 (20361856-20360715)
               

               
               1-1152, gnl|Hg17|chr2 (55428060-55426881)
               

               
               1-1152, gnl|Mm7|chr11 (29461554-29462575)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

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               spl (0.286369)
               

               
               ece (0.229305)
               

               
               eye (0.170503)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.286369)
               

               
               ece (0.229305)
               

               
               eye (0.170503)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

	1-1152, gnl\|bosTau2\|chr11 (20361856-20360715)
	1-1152, gnl\|Hg17\|chr2 (55428060-55426881)
	1-1152, gnl\|Mm7\|chr11 (29461554-29462575)

	spl (0.286369)
	ece (0.229305)
	eye (0.170503)
	liv (0.146284)
	lin (0.145603)
	ute (0.132784)
	ova (0.129132)
	sug (0.127291)
	tra (0.123092)
	pgl (0.118483)
	med (0.116252)
	ecc (0.115035)
	spc (0.113366)