Non-Coding RNA Search

Ss1.1-rute2131b_i7.5

Sequence:


               
               TTGAAGCTCAGCGGTCGCCATGGAGCTGTTGGGCGAGTATGTCGGGCAGGACGGGCAGCG
GCAGCGGCTACGAGTGCCCTGTGAGGCGCCAGGCAATGCCGACCATTTCCAGGGCTTGCT
GTCGGGCGTGGCTCGGATGAAGGAGCTGGTGGCCGAGCTCTTCGGTTCCCCGGTACAGGG
GGAAGCTCAGGACCGGGTGGCGGCGGCTCCAGAAGAGGCCTTGGACGGTGATGATGAAGA
TGATGCAGAAGATGAAAATAACATTGATAACAGAACTAACTCAGATGGACCAACTGCAAA
ACGGCCAAAACCACCATCTTAACAGTGGCTTTTATGAAATTTAAAGACTGCCACTATCTT
ATCACATACTGACATTTAAGGAAGACTTATGTTCTAACGTGGAAAGCATTCACTTTGTTC
CCCTGGAACCGTTTTGTCAAAGGAGAAACCTTTCTTCTGTTCCCAATGAAGAAAAATATA
ATAAATGTTTAGAAATGAAAAAAAAAAAAAAAAAAAGAAGTAAGTTTCAGACCATGGAAA
TAAAATAGACATTTAATAAGGTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGAAGCTCAGCGGTCGCCATGGAGCTGTTGGGCGAGTATGTCGGGCAGGACGGGCAGCG
GCAGCGGCTACGAGTGCCCTGTGAGGCGCCAGGCAATGCCGACCATTTCCAGGGCTTGCT
GTCGGGCGTGGCTCGGATGAAGGAGCTGGTGGCCGAGCTCTTCGGTTCCCCGGTACAGGG
GGAAGCTCAGGACCGGGTGGCGGCGGCTCCAGAAGAGGCCTTGGACGGTGATGATGAAGA
TGATGCAGAAGATGAAAATAACATTGATAACAGAACTAACTCAGATGGACCAACTGCAAA
ACGGCCAAAACCACCATCTTAACAGTGGCTTTTATGAAATTTAAAGACTGCCACTATCTT
ATCACATACTGACATTTAAGGAAGACTTATGTTCTAACGTGGAAAGCATTCACTTTGTTC
CCCTGGAACCGTTTTGTCAAAGGAGAAACCTTTCTTCTGTTCCCAATGAAGAAAAATATA
ATAAATGTTTAGAAATGAAAAAAAAAAAAAAAAAAAGAAGTAAGTTTCAGACCATGGAAA
TAAAATAGACATTTAATAAGGTGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61814861|ref|XP_611099.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61814861|ref|XP_611099.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               227-562, gnl|bosTau2|chr21 (38645439-38645775)
               

               
               227-562, gnl|Hg17|chr14 (92739881-92739544)
               

               
               227-562, gnl|Mm7|chr12 (100249461-100249008)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               227-562, gnl|bosTau2|chr21 (38645439-38645775)
               

               
               227-562, gnl|Hg17|chr14 (92739881-92739544)
               

               
               227-562, gnl|Mm7|chr12 (100249461-100249008)

Expressed library(ies): 27 entry(ies)

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Expressed library(ies): 27 entry(ies)

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               cki (0.660939)
               

               
               che (0.545256)
               

               
               fce (0.543183)
               

               
               cst (0.420109)
               

               
               aor (0.390549)
               

               
               elu (0.385356)
               

               
               sme (0.305437)
               

               
               fat (0.294855)
               

               
               tra (0.246184)
               

               
               eru (0.240096)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               mga (0.160205)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)

Expressed library(ies): 27 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.660939)
               

               
               che (0.545256)
               

               
               fce (0.543183)
               

               
               cst (0.420109)
               

               
               aor (0.390549)
               

               
               elu (0.385356)
               

               
               sme (0.305437)
               

               
               fat (0.294855)
               

               
               tra (0.246184)
               

               
               eru (0.240096)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               mga (0.160205)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)

	227-562, gnl\|bosTau2\|chr21 (38645439-38645775)
	227-562, gnl\|Hg17\|chr14 (92739881-92739544)
	227-562, gnl\|Mm7\|chr12 (100249461-100249008)

	cki (0.660939)
	che (0.545256)
	fce (0.543183)
	cst (0.420109)
	aor (0.390549)
	elu (0.385356)
	sme (0.305437)
	fat (0.294855)
	tra (0.246184)
	eru (0.240096)
	ece (0.229305)
	spc (0.226732)
	fli (0.202881)
	fcc (0.197785)
	cmu (0.186393)
	duo (0.172801)
	eye (0.170503)
	cut (0.169924)
	cje (0.165235)
	mga (0.160205)
	hlv (0.139256)
	nmm (0.132802)
	ute (0.132784)
	cov (0.132153)
	eep (0.122564)
	med (0.116252)
	nbm (0.0993246)