Non-Coding RNA Search

Ss1.1-rute2131b_k14.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGGC
TGCAGGTGACCTTTATTTCTCAAGCTTCTCCGACTTGTGGGGGGGGTTGGGAGGTTCAGC
TTGGGATACATCTTCTCCTGGCTGGCCGCCTTCAGCCCTGGGTTCAGCCGGGGGAGGGGA
AGGAGGTACCTTTTTTGTACCTCCAAGCCAAGCCCCAAAAGCTGATCCCACGGAGCCCAG
GAGGATGTTGGATGATGTGGAGAGTCCAGCTGCCCCCACGGACTGGAGAGTCGCCACCAG
GCTGCCGGCTGCGACGCCGCCCCCGTTGGCGACGGCGGCCGCTGACATCATCTTGGCCGC
TAAGGAGGAGGCCGCGATCCCTGCCCCGGTGAAGCCCAGGGCTCCCAGCACCACGGGCAC
AGCCCCCACGGCCAGGGCTCCTCCGATGGCTGCTGCAGCTGCCCGTTTCATCATGGGGAC
CCTCTTCTCGCCGGAATTCGTTGACAGAGTCTGGGGACTCTGCTCCGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGGC
TGCAGGTGACCTTTATTTCTCAAGCTTCTCCGACTTGTGGGGGGGGTTGGGAGGTTCAGC
TTGGGATACATCTTCTCCTGGCTGGCCGCCTTCAGCCCTGGGTTCAGCCGGGGGAGGGGA
AGGAGGTACCTTTTTTGTACCTCCAAGCCAAGCCCCAAAAGCTGATCCCACGGAGCCCAG
GAGGATGTTGGATGATGTGGAGAGTCCAGCTGCCCCCACGGACTGGAGAGTCGCCACCAG
GCTGCCGGCTGCGACGCCGCCCCCGTTGGCGACGGCGGCCGCTGACATCATCTTGGCCGC
TAAGGAGGAGGCCGCGATCCCTGCCCCGGTGAAGCCCAGGGCTCCCAGCACCACGGGCAC
AGCCCCCACGGCCAGGGCTCCTCCGATGGCTGCTGCAGCTGCCCGTTTCATCATGGGGAC
CCTCTTCTCGCCGGAATTCGTTGACAGAGTCTGGGGACTCTGCTCCGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6IED3_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6IED3_BOVIN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               97-276, + strand, RNAz p=0.993564

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               97-276, + strand, RNAz p=0.993564

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               60-276, gnl|bosTau2|chr21 (39658582-39658366)
               

               
               60-276, gnl|Hg17|chr14 (93663876-93664083)
               

               
               60-276, gnl|Mm7|chr12 (100937843-100938050)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               60-276, gnl|bosTau2|chr21 (39658582-39658366)
               

               
               60-276, gnl|Hg17|chr14 (93663876-93664083)
               

               
               60-276, gnl|Mm7|chr12 (100937843-100938050)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               fhi (0.508733)
               

               
               ece (0.45861)
               

               
               nlu (0.383362)
               

               
               fbs (0.350693)
               

               
               ecc (0.345105)
               

               
               csp (0.322373)
               

               
               cov (0.264306)
               

               
               ebs (0.236602)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               nco (0.161734)
               

               
               lnt (0.142308)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)

Expressed library(ies): 15 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.508733)
               

               
               ece (0.45861)
               

               
               nlu (0.383362)
               

               
               fbs (0.350693)
               

               
               ecc (0.345105)
               

               
               csp (0.322373)
               

               
               cov (0.264306)
               

               
               ebs (0.236602)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               nco (0.161734)
               

               
               lnt (0.142308)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)

	60-276, gnl\|bosTau2\|chr21 (39658582-39658366)
	60-276, gnl\|Hg17\|chr14 (93663876-93664083)
	60-276, gnl\|Mm7\|chr12 (100937843-100938050)

	fhi (0.508733)
	ece (0.45861)
	nlu (0.383362)
	fbs (0.350693)
	ecc (0.345105)
	csp (0.322373)
	cov (0.264306)
	ebs (0.236602)
	col (0.195008)
	nep (0.183925)
	nco (0.161734)
	lnt (0.142308)
	ute (0.132784)
	eep (0.122564)
	pgl (0.118483)