Ss1.1-rvin011_c10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTCCATATCTGATAAACAGCAGTGGGATGCCGCTATTTATTTTATGGAAGAGGCTCTTCA GGCTCGTCTCAAGGATACTGAAAATGCACTTGAAAATATGGTAGGGCCAGACTGGAAAAA GAGGTGGCTGTACTGGAAGAATCGAACACAAGAACAGTGTGTTCACAATGAGACCAAGAA TGAATTGGAGAAGATGTTGAAATGTAATGAGGAGCACCCCGCTTATCTCGCAAGTGATGA GATAACCACAGTCCGAAAGAACCTTGAATCCCGAGGAGTAGAAGTAGACCCAAGCTTGAT TAAGGATACTTGGCACCAAGTTTATAGAAGACATTTCTTAAAAACAGCTCTAAACCATTG TAACCTTTGTCGGAGAGGCTTCTATTACTACCAAAGGCATTTCGTAGATTCTGAGTTGGA ATGCAACGATGTTGTCTTGTTTTGGCGAATACAGCGCATGCTAGCTATCACCGCAAATAC TTTAAGACAGCAACTTACAAACACTGAAGTTAGGCGATTAGAGAAAAATGTTAAAGAAGT ATTGGAAGATTTTGCTGAAGATAGTGAGAAGAAGGTAAAATTGCTCACTGGTAAACGAGT TCAGCTGGCCGAAGACCTCAAGAAAGTTAGAGAAATTCAAGAAAAACTTGATGCTTTTAT TGAAGCTCTTCATCAGGAGAAATAAATTGTAATAAAAACCTACTCATACTATAATCACCT CTGCATACATCTGAAGAAAGAAAACTCCAAAATCTTTTGTCCTGCCTTTTTTTTTCTTCT GCTATTCCACCTTTCTAAACATAAAATAAAGTCATGGAATATAAATAATTTATGCAGTGT GTTAGAGACACTTTAACCATCAGCTACCTTTTGAATGAAAGAACAATGCGAATGGCAGTA ACATTCTATTTTATTTTATCAAAGTTGGGATGCTTTAAGTGGCATAGCCATTAGGCTCAG TCCTTGAAGATAAGACACTTGGCCTCCTTCTTGTTGTCTCAGCTAACTCATTAGCTGACA TTACTTGATATCTGTTTATTTTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTCCATATCTGATAAACAGCAGTGGGATGCCGCTATTTATTTTATGGAAGAGGCTCTTCA GGCTCGTCTCAAGGATACTGAAAATGCACTTGAAAATATGGTAGGGCCAGACTGGAAAAA GAGGTGGCTGTACTGGAAGAATCGAACACAAGAACAGTGTGTTCACAATGAGACCAAGAA TGAATTGGAGAAGATGTTGAAATGTAATGAGGAGCACCCCGCTTATCTCGCAAGTGATGA GATAACCACAGTCCGAAAGAACCTTGAATCCCGAGGAGTAGAAGTAGACCCAAGCTTGAT TAAGGATACTTGGCACCAAGTTTATAGAAGACATTTCTTAAAAACAGCTCTAAACCATTG TAACCTTTGTCGGAGAGGCTTCTATTACTACCAAAGGCATTTCGTAGATTCTGAGTTGGA ATGCAACGATGTTGTCTTGTTTTGGCGAATACAGCGCATGCTAGCTATCACCGCAAATAC TTTAAGACAGCAACTTACAAACACTGAAGTTAGGCGATTAGAGAAAAATGTTAAAGAAGT ATTGGAAGATTTTGCTGAAGATAGTGAGAAGAAGGTAAAATTGCTCACTGGTAAACGAGT TCAGCTGGCCGAAGACCTCAAGAAAGTTAGAGAAATTCAAGAAAAACTTGATGCTTTTAT TGAAGCTCTTCATCAGGAGAAATAAATTGTAATAAAAACCTACTCATACTATAATCACCT CTGCATACATCTGAAGAAAGAAAACTCCAAAATCTTTTGTCCTGCCTTTTTTTTTCTTCT GCTATTCCACCTTTCTAAACATAAAATAAAGTCATGGAATATAAATAATTTATGCAGTGT GTTAGAGACACTTTAACCATCAGCTACCTTTTGAATGAAAGAACAATGCGAATGGCAGTA ACATTCTATTTTATTTTATCAAAGTTGGGATGCTTTAAGTGGCATAGCCATTAGGCTCAG TCCTTGAAGATAAGACACTTGGCCTCCTTCTTGTTGTCTCAGCTAACTCATTAGCTGACA TTACTTGATATCTGTTTATTTTCC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
| 156-298, gnl|bosTau2|chr1 (45928825-45928683) | |
| 156-298, gnl|canFam2|chr23 (55184785-55184967) | |
| 156-298, gnl|danRer3|chr6 (18948305-18948484) | |
| 156-298, gnl|dasNov1|scaffold_4604 (50377-50558) | |
| 156-298, gnl|echTel1|scaffold_309162 (31937-31761) | |
| 156-298, gnl|fr1|chrUn (275271681-275271526) | |
| 156-298, gnl|galGal2|chr9 (12454845-12454677) | |
| 156-298, gnl|hg17|chr3 (194863279-194863460) | |
| 156-298, gnl|Hg17|chr3 (194863311-194863453) | |
| 156-298, gnl|loxAfr1|scaffold_5504 (46563-46378) | |
| 156-298, gnl|mm7|chr16 (29295663-29295841) | |
| 156-298, gnl|Mm7|chr16 (29295692-29295834) | |
| 156-298, gnl|monDom2|scaffold_92 (4964716-4964877) | |
| 156-298, gnl|oryCun1|scaffold_207690 (168167-168348) | |
| 156-298, gnl|panTro1|chr2 (198974849-198975030) | |
| 156-298, gnl|rheMac2|chr2 (185873021-185873202) | |
| 156-298, gnl|rn3|chr11 (73066458-73066280) | |
| 156-298, gnl|xenTro1|scaffold_213 (1466305-1466457) | |
| 508-627, gnl|bosTau2|chr1 (45924008-45923890) | |
| 508-627, gnl|canFam2|chr23 (55189147-55189285) | |
| 508-627, gnl|danRer3|chr6 (18952390-18952511) | |
| 508-627, gnl|dasNov1|scaffold_4604 (54367-54506) | |
| 508-627, gnl|echTel1|scaffold_309162 (25806-25667) | |
| 508-627, gnl|fr1|chrUn (275270976-275270858) | |
| 508-627, gnl|galGal2|chr9 (12451865-12451731) | |
| 508-627, gnl|hg17|chr3 (194867639-194867779) | |
| 508-627, gnl|Hg17|chr3 (194867659-194867777) | |
| 508-627, gnl|loxAfr1|scaffold_5504 (42317-42178) | |
| 508-627, gnl|mm7|chr16 (29300293-29300432) | |
| 508-627, gnl|Mm7|chr16 (29300312-29300430) | |
| 508-627, gnl|monDom2|scaffold_92 (4965980-4966110) | |
| 508-627, gnl|oryCun1|scaffold_207690 (174521-174661) | |
| 508-627, gnl|panTro1|chr2 (198979211-198979351) | |
| 508-627, gnl|rheMac2|chr2 (185877355-185877495) | |
| 508-627, gnl|rn3|chr11 (73063192-73063053) | |
| 508-627, gnl|tetNig1|chr1 (12324476-12324345) | |
| 508-627, gnl|xenTro1|scaffold_213 (1468454-1468592) | |
| 686-1000, gnl|bosTau2|chr1 (45898967-45898651) | |
| 686-1000, gnl|canFam2|chr23 (55212017-55212631) | |
| 686-1000, gnl|dasNov1|scaffold_4604 (79348-80028) | |
| 686-1000, gnl|echTel1|scaffold_319520 (84245-83623) | |
| 686-1000, gnl|hg17|chr3 (194894911-194895556) | |
| 686-1000, gnl|Hg17|chr3 (194895087-194895396) | |
| 686-1000, gnl|loxAfr1|scaffold_5504 (17499-16858) | |
| 686-1000, gnl|mm7|chr16 (29321806-29322418) | |
| 686-1000, gnl|Mm7|chr16 (29321974-29322278) | |
| 686-1000, gnl|oryCun1|scaffold_209775 (83212-83854) | |
| 686-1000, gnl|panTro1|chr2 (199006880-199007525) | |
| 686-1000, gnl|rheMac2|chr2 (185904176-185904821) |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 156-298, gnl|bosTau2|chr1 (45928825-45928683) | |
| 156-298, gnl|canFam2|chr23 (55184785-55184967) | |
| 156-298, gnl|danRer3|chr6 (18948305-18948484) | |
| 156-298, gnl|dasNov1|scaffold_4604 (50377-50558) | |
| 156-298, gnl|echTel1|scaffold_309162 (31937-31761) | |
| 156-298, gnl|fr1|chrUn (275271681-275271526) | |
| 156-298, gnl|galGal2|chr9 (12454845-12454677) | |
| 156-298, gnl|hg17|chr3 (194863279-194863460) | |
| 156-298, gnl|Hg17|chr3 (194863311-194863453) | |
| 156-298, gnl|loxAfr1|scaffold_5504 (46563-46378) | |
| 156-298, gnl|mm7|chr16 (29295663-29295841) | |
| 156-298, gnl|Mm7|chr16 (29295692-29295834) | |
| 156-298, gnl|monDom2|scaffold_92 (4964716-4964877) | |
| 156-298, gnl|oryCun1|scaffold_207690 (168167-168348) | |
| 156-298, gnl|panTro1|chr2 (198974849-198975030) | |
| 156-298, gnl|rheMac2|chr2 (185873021-185873202) | |
| 156-298, gnl|rn3|chr11 (73066458-73066280) | |
| 156-298, gnl|xenTro1|scaffold_213 (1466305-1466457) | |
| 508-627, gnl|bosTau2|chr1 (45924008-45923890) | |
| 508-627, gnl|canFam2|chr23 (55189147-55189285) | |
| 508-627, gnl|danRer3|chr6 (18952390-18952511) | |
| 508-627, gnl|dasNov1|scaffold_4604 (54367-54506) | |
| 508-627, gnl|echTel1|scaffold_309162 (25806-25667) | |
| 508-627, gnl|fr1|chrUn (275270976-275270858) | |
| 508-627, gnl|galGal2|chr9 (12451865-12451731) | |
| 508-627, gnl|hg17|chr3 (194867639-194867779) | |
| 508-627, gnl|Hg17|chr3 (194867659-194867777) | |
| 508-627, gnl|loxAfr1|scaffold_5504 (42317-42178) | |
| 508-627, gnl|mm7|chr16 (29300293-29300432) | |
| 508-627, gnl|Mm7|chr16 (29300312-29300430) | |
| 508-627, gnl|monDom2|scaffold_92 (4965980-4966110) | |
| 508-627, gnl|oryCun1|scaffold_207690 (174521-174661) | |
| 508-627, gnl|panTro1|chr2 (198979211-198979351) | |
| 508-627, gnl|rheMac2|chr2 (185877355-185877495) | |
| 508-627, gnl|rn3|chr11 (73063192-73063053) | |
| 508-627, gnl|tetNig1|chr1 (12324476-12324345) | |
| 508-627, gnl|xenTro1|scaffold_213 (1468454-1468592) | |
| 686-1000, gnl|bosTau2|chr1 (45898967-45898651) | |
| 686-1000, gnl|canFam2|chr23 (55212017-55212631) | |
| 686-1000, gnl|dasNov1|scaffold_4604 (79348-80028) | |
| 686-1000, gnl|echTel1|scaffold_319520 (84245-83623) | |
| 686-1000, gnl|hg17|chr3 (194894911-194895556) | |
| 686-1000, gnl|Hg17|chr3 (194895087-194895396) | |
| 686-1000, gnl|loxAfr1|scaffold_5504 (17499-16858) | |
| 686-1000, gnl|mm7|chr16 (29321806-29322418) | |
| 686-1000, gnl|Mm7|chr16 (29321974-29322278) | |
| 686-1000, gnl|oryCun1|scaffold_209775 (83212-83854) | |
| 686-1000, gnl|panTro1|chr2 (199006880-199007525) | |
| 686-1000, gnl|rheMac2|chr2 (185904176-185904821) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| vin (0.332557) | |
| ret (0.128733) | |
| thg (0.126791) | |
| tra (0.123092) | |
| cbl (0.114797) | |
| spc (0.113366) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| vin (0.332557) | |
| ret (0.128733) | |
| thg (0.126791) | |
| tra (0.123092) | |
| cbl (0.114797) | |
| spc (0.113366) |