Ss1.1-rvin011_m22.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
GGTCGTTGTCGGAGCCCGTGCCTGGCTGTGCTGCTGCGGGAGGAACCCAGGCCCCGGGCC GAGGCTGCCCCGGGAATGCTTTCAGTCGGCACAAACATGGCTGCGGCCCTGCGATCTGGG GGCGTCCTGCTCCGCGATCTGCGAAGCCGAAAACTGGAATATTAATGCTCAACATGGGAG GCCCCGAAACCGTCGGAGAAGTTCAAGACTTCCTTCGGAGGCTCTTCTTGGACCAAGATC TCATGTCACTTCCTATTCAAAATAAGCTGGGGCCATTCATCGCCAAACGCCGTACCCCCA AAATTCAGGAGCAGTACCGCAGAATTGGAGGCGGGTCCCCCATCAGGATGTGGACTCGAA AGCAAGCGGAGGGCATGGTGAAGCTGCTGGATGAGTTGTCCCCGCACACAGCCCCTCACA AATACTATATTGGATTCCGGTATGTCCACCCTTTAACGGAAGAAGCGATTCAAGAGATGG AGAGGGATGGGCTTGAAAGGGCGATTGCTTTCACACAGTATCCACAGTACAGCTGTGTGA CCACAGGCAGCAGCTTGAATGCCATTTACAGATACTATAATGAAGTGGGAAAGAAGCCCA CAATGAAGTGGAGCACGATTGACAGGTGGCCCACACACCCCCTCCTCATTCAGTGCTTCA CAGACCACATTCTCAAAGAACTGGAACATTTTCCACCGGAGAAGAGACGCGAGGTGGTCA TCCTCTTTTCCGCACACTCACTGCCAATGTCTGTGGTCAACAGAGGGGACCCCTATCCTC AGGAGGTGGGTGCCACTGTCCAGAGAGTCATGGATAAGCTGGGTTACTCCAACCCTTACC GACTGGTTTGGCAGTCCAAGGTTGGTCCGATGCCCTGGCTGGGTCCTCAGACAAGAGAGG CCATCAAAGGGCTCTGTGAGAGGGGGAGGAAGAATATCCTCTTGGTTCCGATCGCGTTTA CCAGTGACCACATTGAAACGCTGTATGAGCTGGACATCGAGTACTCTCAAGTTCTAGGCA GTGAGTGTGGAGCTGAAAACATCAGAAGAGCAGAGTCTCTTAACGGAAACCCGCTGTTCT CCAAGGCCTTGGCGGACCTGGTGCACTCTCACATCCAGTCCAATGAGCGGTGCTCCACGC AGCTGACTCTGAGCTGTCCCCTCTGCGTGAACCCCGTCTGCAGGGAGACCAAATCCTTCT TCACCAGCCAGCAGCTGTGACCCGCCAGAGCACCGCCGGGGTCAGATACGTCCCCGGTGG AGGAGGACGCGTTTAGCCATCAAGGGAGGAAGTTACATTAGTGTACGGCCTTTGCCGCAG TTGTCTGATTTCTTGAGGAGAGGACTCAGAAATCCTTATTGAGGGCTTTCTATTTTTATA GGCCAATACAATATGCATTTATACTCCCACGTTCTGGGTAAAGTTATTTGTTTGCGGTGT CCATGAGGCTATTTTTAAAAGGAGTTTGAAAAAATTTATTTTATGAGGCACGCATGTATT TTCATGTTTTGGTTTTATTACGCCCAAAACACCCTGCAGGGATATGGAGAGCCCCCACCT CTGTGGCTGTCAGTGTGAATGAGATCTATTTACAGTCTCACACGTATTTTTTTGAAGTGA ACATAGTTGGGTAAATGAACTATAATTTGAAAAAAGAAAGGATACCTAATCTTTCCCTCA GCCTGTGGTTACAGATTGCTGGTCAGGTGATGTGGTTCCTAAGGTGGCTGCTTTGCCAGT GATGTCACTGTTCATTTTGGTCCTTTCGTGTGAACCTCAGTTTCCTTACCATCAGATGGA ATCAAGTGTAGATTCCAAAAGCGCTCTGAGATTCCACAGACCCTCAGGGCGGATTACTCG GCAACCTGCGTTTGTCACCGGCTGGCCTCCCCGCTTAGTGGGACTGGGCGGTGCCACAGG AGGGGTCTTCCCCTCCCCATCTTCCCGCCTGCAAGGATGACGAAGCTGAAAACGCTGACA AAGGGCTTCGTGTTCAAAGCCCGTTTGTCCCAGGACTTTAAGGACCTTGAGCATCTTCTT TGTCTTGGTTGAATATCCCCTTCTGCGTATTCGTTTGAAGAATTATTTTTTAAAGTCAAC TCTGTTTTGTAACGTCAAATTATTTCTTAATTTTAATTTTTATTATAAAATTTATATAAC CATGCTATAGGAAATTTGGAAATAAAGGAAAATAACCACTCTAATGCAACAACTATTAAT CATATTATTGTATTTCATATCCGTCTTTTCCTGTAGATGTGTTAAATGCCATTGTAACTT TGTGAGTGAAAAGTTGTTCTAAGAATGTAGAAATCATATAAGATCAGACTTGCATCTTCT ACACCTGGATTAAATGGAGTTAAAAATCAAAAAAAA |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
GGTCGTTGTCGGAGCCCGTGCCTGGCTGTGCTGCTGCGGGAGGAACCCAGGCCCCGGGCC GAGGCTGCCCCGGGAATGCTTTCAGTCGGCACAAACATGGCTGCGGCCCTGCGATCTGGG GGCGTCCTGCTCCGCGATCTGCGAAGCCGAAAACTGGAATATTAATGCTCAACATGGGAG GCCCCGAAACCGTCGGAGAAGTTCAAGACTTCCTTCGGAGGCTCTTCTTGGACCAAGATC TCATGTCACTTCCTATTCAAAATAAGCTGGGGCCATTCATCGCCAAACGCCGTACCCCCA AAATTCAGGAGCAGTACCGCAGAATTGGAGGCGGGTCCCCCATCAGGATGTGGACTCGAA AGCAAGCGGAGGGCATGGTGAAGCTGCTGGATGAGTTGTCCCCGCACACAGCCCCTCACA AATACTATATTGGATTCCGGTATGTCCACCCTTTAACGGAAGAAGCGATTCAAGAGATGG AGAGGGATGGGCTTGAAAGGGCGATTGCTTTCACACAGTATCCACAGTACAGCTGTGTGA CCACAGGCAGCAGCTTGAATGCCATTTACAGATACTATAATGAAGTGGGAAAGAAGCCCA CAATGAAGTGGAGCACGATTGACAGGTGGCCCACACACCCCCTCCTCATTCAGTGCTTCA CAGACCACATTCTCAAAGAACTGGAACATTTTCCACCGGAGAAGAGACGCGAGGTGGTCA TCCTCTTTTCCGCACACTCACTGCCAATGTCTGTGGTCAACAGAGGGGACCCCTATCCTC AGGAGGTGGGTGCCACTGTCCAGAGAGTCATGGATAAGCTGGGTTACTCCAACCCTTACC GACTGGTTTGGCAGTCCAAGGTTGGTCCGATGCCCTGGCTGGGTCCTCAGACAAGAGAGG CCATCAAAGGGCTCTGTGAGAGGGGGAGGAAGAATATCCTCTTGGTTCCGATCGCGTTTA CCAGTGACCACATTGAAACGCTGTATGAGCTGGACATCGAGTACTCTCAAGTTCTAGGCA GTGAGTGTGGAGCTGAAAACATCAGAAGAGCAGAGTCTCTTAACGGAAACCCGCTGTTCT CCAAGGCCTTGGCGGACCTGGTGCACTCTCACATCCAGTCCAATGAGCGGTGCTCCACGC AGCTGACTCTGAGCTGTCCCCTCTGCGTGAACCCCGTCTGCAGGGAGACCAAATCCTTCT TCACCAGCCAGCAGCTGTGACCCGCCAGAGCACCGCCGGGGTCAGATACGTCCCCGGTGG AGGAGGACGCGTTTAGCCATCAAGGGAGGAAGTTACATTAGTGTACGGCCTTTGCCGCAG TTGTCTGATTTCTTGAGGAGAGGACTCAGAAATCCTTATTGAGGGCTTTCTATTTTTATA GGCCAATACAATATGCATTTATACTCCCACGTTCTGGGTAAAGTTATTTGTTTGCGGTGT CCATGAGGCTATTTTTAAAAGGAGTTTGAAAAAATTTATTTTATGAGGCACGCATGTATT TTCATGTTTTGGTTTTATTACGCCCAAAACACCCTGCAGGGATATGGAGAGCCCCCACCT CTGTGGCTGTCAGTGTGAATGAGATCTATTTACAGTCTCACACGTATTTTTTTGAAGTGA ACATAGTTGGGTAAATGAACTATAATTTGAAAAAAGAAAGGATACCTAATCTTTCCCTCA GCCTGTGGTTACAGATTGCTGGTCAGGTGATGTGGTTCCTAAGGTGGCTGCTTTGCCAGT GATGTCACTGTTCATTTTGGTCCTTTCGTGTGAACCTCAGTTTCCTTACCATCAGATGGA ATCAAGTGTAGATTCCAAAAGCGCTCTGAGATTCCACAGACCCTCAGGGCGGATTACTCG GCAACCTGCGTTTGTCACCGGCTGGCCTCCCCGCTTAGTGGGACTGGGCGGTGCCACAGG AGGGGTCTTCCCCTCCCCATCTTCCCGCCTGCAAGGATGACGAAGCTGAAAACGCTGACA AAGGGCTTCGTGTTCAAAGCCCGTTTGTCCCAGGACTTTAAGGACCTTGAGCATCTTCTT TGTCTTGGTTGAATATCCCCTTCTGCGTATTCGTTTGAAGAATTATTTTTTAAAGTCAAC TCTGTTTTGTAACGTCAAATTATTTCTTAATTTTAATTTTTATTATAAAATTTATATAAC CATGCTATAGGAAATTTGGAAATAAAGGAAAATAACCACTCTAATGCAACAACTATTAAT CATATTATTGTATTTCATATCCGTCTTTTCCTGTAGATGTGTTAAATGCCATTGTAACTT TGTGAGTGAAAAGTTGTTCTAAGAATGTAGAAATCATATAAGATCAGACTTGCATCTTCT ACACCTGGATTAAATGGAGTTAAAAATCAAAAAAAA |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 2 entry(ies) | More info |
Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
859-2260, + strand, RNAz p=0.729374 | |
1914-2027, + strand, RNAz p=0.830552 |
Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
859-2260, + strand, RNAz p=0.729374 | |
1914-2027, + strand, RNAz p=0.830552 |
Homologous human UTR: 1 entry(ies) | More info |
Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
5' of BC039841, + |
Aligned organism(s): 71 entry(ies) | More info |
Aligned organism(s): 71 entry(ies) | Help | Less info |
263-411, gnl|bosTau2|chr24 (43116203-43116351) | |
263-411, gnl|canFam2|chr1 (21368476-21368622) | |
263-411, gnl|canFam2|chr1 (21368627-21368449) | |
263-411, gnl|danRer3|chr24 (24485750-24485618) | |
263-411, gnl|danRer3|chr24 (24485599-24485752) | |
263-411, gnl|dasNov1|scaffold_2061 (46184-46038) | |
263-411, gnl|dasNov1|scaffold_2061 (46033-46210) | |
263-411, gnl|echTel1|scaffold_164305 (981-851) | |
263-411, gnl|echTel1|scaffold_164305 (830-1007) | |
263-411, gnl|fr1|chrUn (330484190-330484322) | |
263-411, gnl|fr1|chrUn (323832215-323832063) | |
263-411, gnl|galGal2|chrUn (5151438-5151601) | |
263-411, gnl|hg17|chr18 (53389620-53389797) | |
263-411, gnl|Hg17|chr18 (53389770-53389622) | |
263-411, gnl|hg17|chr3 (34889395-34889544) | |
263-411, gnl|mm7|chr18 (64863619-64863473) | |
263-411, gnl|mm7|chr18 (64863468-64863645) | |
263-411, gnl|Mm7|chr18 (64863618-64863470) | |
263-411, gnl|monDom2|scaffold_15 (25774773-25774919) | |
263-411, gnl|monDom2|scaffold_20 (44689652-44689475) | |
263-411, gnl|oryCun1|scaffold_178694 (12537-12391) | |
263-411, gnl|oryCun1|scaffold_210834 (115881-116058) | |
263-411, gnl|panTro1|chr17 (50280605-50280782) | |
263-411, gnl|panTro1|chr2 (35906403-35906549) | |
263-411, gnl|rheMac2|chr18 (50827116-50827293) | |
263-411, gnl|rheMac2|chr2 (177312503-177312649) | |
263-411, gnl|rn3|chr18 (60766877-60766731) | |
263-411, gnl|rn3|chr18 (60766726-60766903) | |
263-411, gnl|tetNig1|chrUn_random (24756191-24756322) | |
263-411, gnl|tetNig1|chrUn_random (24756341-24756189) | |
263-411, gnl|xenTro1|scaffold_431 (51532-51677) | |
263-411, gnl|xenTro1|scaffold_431 (51683-51506) | |
533-653, gnl|bosTau2|chr24 (43125703-43125822) | |
533-653, gnl|canFam2|chr1 (21378377-21378240) | |
533-653, gnl|danRer3|chr24 (24479460-24479575) | |
533-653, gnl|dasNov1|scaffold_2061 (36211-36341) | |
533-653, gnl|echTel1|scaffold_323850 (84090-84221) | |
533-653, gnl|galGal2|chrUn (5146440-5146565) | |
533-653, gnl|hg17|chr18 (53381094-53381228) | |
533-653, gnl|Hg17|chr18 (53381223-53381104) | |
533-653, gnl|mm7|chr18 (64856131-64856265) | |
533-653, gnl|Mm7|chr18 (64856260-64856141) | |
533-653, gnl|monDom2|scaffold_20 (44702753-44702614) | |
533-653, gnl|oryCun1|scaffold_210834 (104446-104580) | |
533-653, gnl|panTro1|chr17 (50272098-50272232) | |
533-653, gnl|rheMac2|chr18 (50818016-50818150) | |
533-653, gnl|rn3|chr18 (60759269-60759403) | |
533-653, gnl|tetNig1|chrUn_random (24756838-24756714) | |
533-653, gnl|xenTro1|scaffold_431 (53516-53393) | |
859-1025, gnl|bosTau2|chr24 (43133541-43133707) | |
859-1025, gnl|canFam2|chr1 (21386310-21386475) | |
859-1025, gnl|danRer3|chr24 (24474311-24474150) | |
859-1025, gnl|dasNov1|scaffold_105156 (5874-5710) | |
859-1025, gnl|echTel1|scaffold_323850 (77930-77765) | |
859-1025, gnl|Hg17|chr18 (53372656-53372490) | |
859-1025, gnl|hg17|chr3 (34889997-34890163) | |
859-1025, gnl|loxAfr1|scaffold_23500 (19182-19347) | |
859-1025, gnl|mm7|chr18 (64850097-64849943) | |
859-1025, gnl|Mm7|chr18 (64850100-64849934) | |
859-1025, gnl|monDom2|scaffold_15 (25775367-25775532) | |
859-1025, gnl|oryCun1|scaffold_178694 (11946-11799) | |
859-1025, gnl|panTro1|chr2 (35907002-35907165) | |
859-1025, gnl|rheMac2|chr2 (177313100-177313266) | |
859-1025, gnl|rn3|chr18 (60753575-60753421) | |
859-1025, gnl|tetNig1|chrUn_random (24757742-24757902) | |
859-1025, gnl|xenTro1|scaffold_431 (58662-58827) | |
1070-1486, gnl|bosTau2|chr24 (43136254-43136689) | |
1070-1486, gnl|Hg17|chr18 (53369092-53368656) | |
1070-1486, gnl|Mm7|chr18 (64846641-64846114) | |
1571-2292, gnl|bosTau2|chr24 (43136935-43137633) | |
1571-2292, gnl|Hg17|chr18 (53368572-53367681) |
Aligned organism(s): 71 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
263-411, gnl|bosTau2|chr24 (43116203-43116351) | |
263-411, gnl|canFam2|chr1 (21368476-21368622) | |
263-411, gnl|canFam2|chr1 (21368627-21368449) | |
263-411, gnl|danRer3|chr24 (24485750-24485618) | |
263-411, gnl|danRer3|chr24 (24485599-24485752) | |
263-411, gnl|dasNov1|scaffold_2061 (46184-46038) | |
263-411, gnl|dasNov1|scaffold_2061 (46033-46210) | |
263-411, gnl|echTel1|scaffold_164305 (981-851) | |
263-411, gnl|echTel1|scaffold_164305 (830-1007) | |
263-411, gnl|fr1|chrUn (330484190-330484322) | |
263-411, gnl|fr1|chrUn (323832215-323832063) | |
263-411, gnl|galGal2|chrUn (5151438-5151601) | |
263-411, gnl|hg17|chr18 (53389620-53389797) | |
263-411, gnl|Hg17|chr18 (53389770-53389622) | |
263-411, gnl|hg17|chr3 (34889395-34889544) | |
263-411, gnl|mm7|chr18 (64863619-64863473) | |
263-411, gnl|mm7|chr18 (64863468-64863645) | |
263-411, gnl|Mm7|chr18 (64863618-64863470) | |
263-411, gnl|monDom2|scaffold_15 (25774773-25774919) | |
263-411, gnl|monDom2|scaffold_20 (44689652-44689475) | |
263-411, gnl|oryCun1|scaffold_178694 (12537-12391) | |
263-411, gnl|oryCun1|scaffold_210834 (115881-116058) | |
263-411, gnl|panTro1|chr17 (50280605-50280782) | |
263-411, gnl|panTro1|chr2 (35906403-35906549) | |
263-411, gnl|rheMac2|chr18 (50827116-50827293) | |
263-411, gnl|rheMac2|chr2 (177312503-177312649) | |
263-411, gnl|rn3|chr18 (60766877-60766731) | |
263-411, gnl|rn3|chr18 (60766726-60766903) | |
263-411, gnl|tetNig1|chrUn_random (24756191-24756322) | |
263-411, gnl|tetNig1|chrUn_random (24756341-24756189) | |
263-411, gnl|xenTro1|scaffold_431 (51532-51677) | |
263-411, gnl|xenTro1|scaffold_431 (51683-51506) | |
533-653, gnl|bosTau2|chr24 (43125703-43125822) | |
533-653, gnl|canFam2|chr1 (21378377-21378240) | |
533-653, gnl|danRer3|chr24 (24479460-24479575) | |
533-653, gnl|dasNov1|scaffold_2061 (36211-36341) | |
533-653, gnl|echTel1|scaffold_323850 (84090-84221) | |
533-653, gnl|galGal2|chrUn (5146440-5146565) | |
533-653, gnl|hg17|chr18 (53381094-53381228) | |
533-653, gnl|Hg17|chr18 (53381223-53381104) | |
533-653, gnl|mm7|chr18 (64856131-64856265) | |
533-653, gnl|Mm7|chr18 (64856260-64856141) | |
533-653, gnl|monDom2|scaffold_20 (44702753-44702614) | |
533-653, gnl|oryCun1|scaffold_210834 (104446-104580) | |
533-653, gnl|panTro1|chr17 (50272098-50272232) | |
533-653, gnl|rheMac2|chr18 (50818016-50818150) | |
533-653, gnl|rn3|chr18 (60759269-60759403) | |
533-653, gnl|tetNig1|chrUn_random (24756838-24756714) | |
533-653, gnl|xenTro1|scaffold_431 (53516-53393) | |
859-1025, gnl|bosTau2|chr24 (43133541-43133707) | |
859-1025, gnl|canFam2|chr1 (21386310-21386475) | |
859-1025, gnl|danRer3|chr24 (24474311-24474150) | |
859-1025, gnl|dasNov1|scaffold_105156 (5874-5710) | |
859-1025, gnl|echTel1|scaffold_323850 (77930-77765) | |
859-1025, gnl|Hg17|chr18 (53372656-53372490) | |
859-1025, gnl|hg17|chr3 (34889997-34890163) | |
859-1025, gnl|loxAfr1|scaffold_23500 (19182-19347) | |
859-1025, gnl|mm7|chr18 (64850097-64849943) | |
859-1025, gnl|Mm7|chr18 (64850100-64849934) | |
859-1025, gnl|monDom2|scaffold_15 (25775367-25775532) | |
859-1025, gnl|oryCun1|scaffold_178694 (11946-11799) | |
859-1025, gnl|panTro1|chr2 (35907002-35907165) | |
859-1025, gnl|rheMac2|chr2 (177313100-177313266) | |
859-1025, gnl|rn3|chr18 (60753575-60753421) | |
859-1025, gnl|tetNig1|chrUn_random (24757742-24757902) | |
859-1025, gnl|xenTro1|scaffold_431 (58662-58827) | |
1070-1486, gnl|bosTau2|chr24 (43136254-43136689) | |
1070-1486, gnl|Hg17|chr18 (53369092-53368656) | |
1070-1486, gnl|Mm7|chr18 (64846641-64846114) | |
1571-2292, gnl|bosTau2|chr24 (43136935-43137633) | |
1571-2292, gnl|Hg17|chr18 (53368572-53367681) |
Expressed library(ies): 29 entry(ies) | More info |
Expressed library(ies): 29 entry(ies) | Help | Less info |
elu (0.770713) | |
eli (0.759071) | |
nbm (0.695272) | |
vin (0.665115) | |
fli (0.405762) | |
rec (0.346141) | |
tbr (0.308356) | |
cov (0.264306) | |
sug (0.254582) | |
ecc (0.23007) | |
ece (0.229305) | |
nms (0.213858) | |
hea (0.204499) | |
nlu (0.191681) | |
gul (0.177588) | |
eye (0.170503) | |
csp (0.161186) | |
cli (0.152812) | |
bfe (0.149858) | |
ski (0.146735) | |
spl (0.143184) | |
hlv (0.139256) | |
nca (0.136874) | |
pla (0.133672) | |
nmm (0.132802) | |
ute (0.132784) | |
ova (0.129132) | |
cly (0.120642) | |
spc (0.113366) |
Expressed library(ies): 29 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
elu (0.770713) | |
eli (0.759071) | |
nbm (0.695272) | |
vin (0.665115) | |
fli (0.405762) | |
rec (0.346141) | |
tbr (0.308356) | |
cov (0.264306) | |
sug (0.254582) | |
ecc (0.23007) | |
ece (0.229305) | |
nms (0.213858) | |
hea (0.204499) | |
nlu (0.191681) | |
gul (0.177588) | |
eye (0.170503) | |
csp (0.161186) | |
cli (0.152812) | |
bfe (0.149858) | |
ski (0.146735) | |
spl (0.143184) | |
hlv (0.139256) | |
nca (0.136874) | |
pla (0.133672) | |
nmm (0.132802) | |
ute (0.132784) | |
ova (0.129132) | |
cly (0.120642) | |
spc (0.113366) |