Non-Coding RNA Search

Ss1.1-rvin011_p12.5

Sequence:


               
               AGACTTGGGAAGGAGGGGGAACAGCCGGGACTTGGCAGCACTTGAAATAGGAGGAATACA
GCAGCCGAAATGTGCAGACTTTGTAACCAAGCCCACCAGATCGGTCTGTGCCTTCACGTG
ACCACCATCTGTGCCTCCCTTGCTCTATCCAAATTTGTGTAGGCAGCTCCTTGGAGCCAT
TCCTAAAAATATAGCTGCACCAGGCCCTAGAAACTGTAGTCAAGCAACAGGCTTAACTTT
TTTCCCTCCTTAAGTTAAACCTCCATACAGTTTCTTTGGAGGGTTTTCCAGCTGCCAACG
TCGGGTGTGTTCTGACAGCGAGAACCCATTATATGTGTGTTTTCTATTTGTGTCTAGGAC
ATCAGAATCTGTTCATATTCTTGTACTTCCTCTCTTGCATGCATGGTATCCGGAATATGT
TTATAGGGGTTTTTTTGGTTGTTGTTGTTGTTTTTAGTAAAGGGTGGGGTAGGGGTACCC
AAGGGTTCAGCAGTAGAGCGGTTAATGATAATCTGAAATCATGAAAAGGCAACTTAAAAG
TTGCCCTGAAAAACCAATCACATCCTATCATGAAGCATCCCTTTACATTTTCTAGTAATT
GTCATTGAACCATTGCTGTAAAGGCATCCATTTCTGTAAATCACGCTGGCCCTCAACTCT
TACTGTACTTGAAGGACTTTATCATGTTTTTAGATGTACACTGTCTCTTCAGGGTACTGC
TACAAAGAGCTGATGTCCACATATATTCACTCAGAGTAGAAACATCCATTTAGATAAAGG
CTCAGTGGAGCAGCCTGTGACATGGATACCTGGGTTGGTTTCTTCTAATTTTCTAGTATT
TTATTATCTCAAATGATTATCCCCTTCAAAAATATTGGCTTGTACTTTGGTATCGTGGTC
TTGTTCTTCTGGCATTGAGGGTATTATGAGCAGAAAACAAAGTGTTTCCTACATGTGTGA
GATGGTTGTTTTTAAGGGGATGTATATAATGCAGATCTTCTTTGTTAATAAAATGTTCAT
AATCTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGACTTGGGAAGGAGGGGGAACAGCCGGGACTTGGCAGCACTTGAAATAGGAGGAATACA
GCAGCCGAAATGTGCAGACTTTGTAACCAAGCCCACCAGATCGGTCTGTGCCTTCACGTG
ACCACCATCTGTGCCTCCCTTGCTCTATCCAAATTTGTGTAGGCAGCTCCTTGGAGCCAT
TCCTAAAAATATAGCTGCACCAGGCCCTAGAAACTGTAGTCAAGCAACAGGCTTAACTTT
TTTCCCTCCTTAAGTTAAACCTCCATACAGTTTCTTTGGAGGGTTTTCCAGCTGCCAACG
TCGGGTGTGTTCTGACAGCGAGAACCCATTATATGTGTGTTTTCTATTTGTGTCTAGGAC
ATCAGAATCTGTTCATATTCTTGTACTTCCTCTCTTGCATGCATGGTATCCGGAATATGT
TTATAGGGGTTTTTTTGGTTGTTGTTGTTGTTTTTAGTAAAGGGTGGGGTAGGGGTACCC
AAGGGTTCAGCAGTAGAGCGGTTAATGATAATCTGAAATCATGAAAAGGCAACTTAAAAG
TTGCCCTGAAAAACCAATCACATCCTATCATGAAGCATCCCTTTACATTTTCTAGTAATT
GTCATTGAACCATTGCTGTAAAGGCATCCATTTCTGTAAATCACGCTGGCCCTCAACTCT
TACTGTACTTGAAGGACTTTATCATGTTTTTAGATGTACACTGTCTCTTCAGGGTACTGC
TACAAAGAGCTGATGTCCACATATATTCACTCAGAGTAGAAACATCCATTTAGATAAAGG
CTCAGTGGAGCAGCCTGTGACATGGATACCTGGGTTGGTTTCTTCTAATTTTCTAGTATT
TTATTATCTCAAATGATTATCCCCTTCAAAAATATTGGCTTGTACTTTGGTATCGTGGTC
TTGTTCTTCTGGCATTGAGGGTATTATGAGCAGAAAACAAAGTGTTTCCTACATGTGTGA
GATGGTTGTTTTTAAGGGGATGTATATAATGCAGATCTTCTTTGTTAATAAAATGTTCAT
AATCTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               1-618, gnl|bosTau2|chr5 (51478652-51478053)
               

               
               1-618, gnl|Hg17|chr12 (26277984-26278561)
               

               
               1-618, gnl|Mm7|chr6 (146054739-146055293)
               


               
               792-1032, gnl|bosTau2|chr5 (51478049-51477810)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-618, gnl|bosTau2|chr5 (51478652-51478053)
               

               
               1-618, gnl|Hg17|chr12 (26277984-26278561)
               

               
               1-618, gnl|Mm7|chr6 (146054739-146055293)
               


               
               792-1032, gnl|bosTau2|chr5 (51478049-51477810)

Expressed library(ies): 17 entry(ies)

More info

Expressed library(ies): 17 entry(ies)

Help | Less info


               
               vin (0.665115)
               

               
               tbr (0.616713)
               

               
               ret (0.257467)
               

               
               sug (0.254582)
               

               
               bla (0.248694)
               

               
               mgp (0.230681)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               sin (0.174948)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               ova (0.129132)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.665115)
               

               
               tbr (0.616713)
               

               
               ret (0.257467)
               

               
               sug (0.254582)
               

               
               bla (0.248694)
               

               
               mgp (0.230681)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               sin (0.174948)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               ova (0.129132)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

	1-618, gnl\|bosTau2\|chr5 (51478652-51478053)
	1-618, gnl\|Hg17\|chr12 (26277984-26278561)
	1-618, gnl\|Mm7\|chr6 (146054739-146055293)

	792-1032, gnl\|bosTau2\|chr5 (51478049-51477810)

	vin (0.665115)
	tbr (0.616713)
	ret (0.257467)
	sug (0.254582)
	bla (0.248694)
	mgp (0.230681)
	mas (0.210305)
	hea (0.204499)
	fcc (0.197785)
	aor (0.195274)
	sin (0.174948)
	ski (0.146735)
	pty (0.142714)
	hlv (0.139256)
	ova (0.129132)
	jca (0.11396)
	ldo (0.0970026)