Non-Coding RNA Search

Ss1.1-rvin012_e11.5

Sequence:


               
               AAAAAACTGCTCTGCTCTATGGAGCTGCAATGTAAATGTGTTTGTTTAAAGAAAACAGAT
GGCAAGTGAGTGATTGATTGTTCCCCTGAGGAAGTAGATCTTTTTTTTTTTTTTCCTTAC
ATTTCACAAGCTAGCCCTTTCTCTTTCTTAAGGAAAATAAAGGAGTAACTCTGTTTTTCA
CTTGCAAACTTCCACGACATTTCTTCACTCTTTCTATGTAGTGTTGTTAATGCAATACGT
ATTATAGTTATCTATACACAGTGTAAGACTTAACAAGCTGAAATGATCCACCCTTATATG
TGAGTCCGTCCAAAAAATGTTACTGTTCTGGGTGGGCCGATGTTCTAGATCAGTTACACT
AACCTTCATTTAAAATATTTATTCTAAAATGCCTCCGAGAAATAGTAAAAGAAAAAAAAA
AGTTGTCTAAAATGCAACAGCTTTTATAGTAAATGTACATTTATAAATAAAATACTCAAA
TCAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAACTGCTCTGCTCTATGGAGCTGCAATGTAAATGTGTTTGTTTAAAGAAAACAGAT
GGCAAGTGAGTGATTGATTGTTCCCCTGAGGAAGTAGATCTTTTTTTTTTTTTTCCTTAC
ATTTCACAAGCTAGCCCTTTCTCTTTCTTAAGGAAAATAAAGGAGTAACTCTGTTTTTCA
CTTGCAAACTTCCACGACATTTCTTCACTCTTTCTATGTAGTGTTGTTAATGCAATACGT
ATTATAGTTATCTATACACAGTGTAAGACTTAACAAGCTGAAATGATCCACCCTTATATG
TGAGTCCGTCCAAAAAATGTTACTGTTCTGGGTGGGCCGATGTTCTAGATCAGTTACACT
AACCTTCATTTAAAATATTTATTCTAAAATGCCTCCGAGAAATAGTAAAAGAAAAAAAAA
AGTTGTCTAAAATGCAACAGCTTTTATAGTAAATGTACATTTATAAATAAAATACTCAAA
TCAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-481, gnl|bosTau2|chr6 (31044628-31045095)
               

               
               1-481, gnl|Hg17|chr4 (41542518-41542986)
               

               
               1-481, gnl|Mm7|chr5 (66412207-66412678)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-481, gnl|bosTau2|chr6 (31044628-31045095)
               

               
               1-481, gnl|Hg17|chr4 (41542518-41542986)
               

               
               1-481, gnl|Mm7|chr5 (66412207-66412678)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               vin (0.332557)
               

               
               fco (0.314416)
               

               
               bfe (0.299715)
               

               
               fbs (0.175346)
               

               
               isp (0.150376)
               

               
               hlv (0.139256)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

Expressed library(ies): 8 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               fco (0.314416)
               

               
               bfe (0.299715)
               

               
               fbs (0.175346)
               

               
               isp (0.150376)
               

               
               hlv (0.139256)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

	1-481, gnl\|bosTau2\|chr6 (31044628-31045095)
	1-481, gnl\|Hg17\|chr4 (41542518-41542986)
	1-481, gnl\|Mm7\|chr5 (66412207-66412678)

	vin (0.332557)
	fco (0.314416)
	bfe (0.299715)
	fbs (0.175346)
	isp (0.150376)
	hlv (0.139256)
	eru (0.120048)
	ecc (0.115035)