Non-Coding RNA Search

Ss1.1-rvin012_g20.5

Sequence:


               
               AAGAATCTCACCTTGTAACTGAGAACTGAGCCTTTTGAAAAAAGGAGGTGCGATAAAGGG
GAAGGAACATGTGTCAGAAGCTCTGTGGATGCTGAAGTTCAAGGCAGATGAGTGCAGGTT
TGCTGGAGGACATTATCCTTTCCAGAAGGAATCAGAAAATATTCTGGGAGACAGAACGAA
CTCCCAAGAACGGAGACAACAGGAAAACACTTGTATCGTGACAAAATGACACAAAGCACA
AGCATTCAGAGACGTGTCAGAGGGGAGACGTGTCAGAGGGCTTCAGATCAGCTGGCCCTG
GAGGCTTAACAAGGAAGCCATTAGGGACACCCTGCTGGGCCGAATGGTTTTTAGAACATA
CGGTACTTTGTGCCATCACCCAGCTGTGAATTCCCTGGATTTGTCAGCTAGTGTCACAAC
CTTAAGAAGAAAATGGTAGCTTACACCCCGCCCCCCCACAACTAATTTACTGTATCCCTT
CTTATTATAACCTCCAGTACAACTGTGAAGCAACCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAATCTCACCTTGTAACTGAGAACTGAGCCTTTTGAAAAAAGGAGGTGCGATAAAGGG
GAAGGAACATGTGTCAGAAGCTCTGTGGATGCTGAAGTTCAAGGCAGATGAGTGCAGGTT
TGCTGGAGGACATTATCCTTTCCAGAAGGAATCAGAAAATATTCTGGGAGACAGAACGAA
CTCCCAAGAACGGAGACAACAGGAAAACACTTGTATCGTGACAAAATGACACAAAGCACA
AGCATTCAGAGACGTGTCAGAGGGGAGACGTGTCAGAGGGCTTCAGATCAGCTGGCCCTG
GAGGCTTAACAAGGAAGCCATTAGGGACACCCTGCTGGGCCGAATGGTTTTTAGAACATA
CGGTACTTTGTGCCATCACCCAGCTGTGAATTCCCTGGATTTGTCAGCTAGTGTCACAAC
CTTAAGAAGAAAATGGTAGCTTACACCCCGCCCCCCCACAACTAATTTACTGTATCCCTT
CTTATTATAACCTCCAGTACAACTGTGAAGCAACCG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               289-402, + strand, RNAz p=0.636144

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               289-402, + strand, RNAz p=0.636144

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               16-514, gnl|bosTau2|chr3 (8534927-8535412)
               

               
               16-514, gnl|Hg17|chr1 (151266445-151266911)
               

               
               16-514, gnl|Mm7|chr3 (89983679-89983225)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-514, gnl|bosTau2|chr3 (8534927-8535412)
               

               
               16-514, gnl|Hg17|chr1 (151266445-151266911)
               

               
               16-514, gnl|Mm7|chr3 (89983679-89983225)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               vin (0.332557)
               

               
               clu (0.119646)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               clu (0.119646)

	16-514, gnl\|bosTau2\|chr3 (8534927-8535412)
	16-514, gnl\|Hg17\|chr1 (151266445-151266911)
	16-514, gnl\|Mm7\|chr3 (89983679-89983225)