Non-Coding RNA Search

Ss1.1-rvin014_n12.5

Sequence:


               
               AAAAACTACNTGAAGAGAGATGAAAGACTCTCCAGTTCTTTAGAAAGGAACAAATTTTAT
TCCTTTGCATTGGATAAGACAATCACACCGGACACTAAGGCTTTGCTTGAAAGAGCTAAA
TCCCTCTCTTCCTCTCGAGAGGAAAACTGGTCTTTTCTCGATTGGGATTCCCGATTTGCT
AATTTTCGGAACAACAAAGATAAAGAAAAGGTAGACTCTGCTCCAAGACCTATTCCATCC
TGGTACATGAAAAAGAAGAAAATTCGGACTGATTCAGAAGGAAAAATGGATGATAAAAAA
GATGACCATAAAGAAGAAGAACAGGAAAGACAAGAGTTATTTGCTTCCCGTTTTTTACAC
AGCTCAATCTTTGAACAAGATTCCAAGCGACTGCAGCATCTAGAAAGAAAAGATGAAGAA
TCCGACTTTGTTTCTGGCAGGTTGTACGGGAGACAGACATCTGATGGAGTGAATAGCACG
AGTGATTTCATTCAAGAGCCAGTAGTTCTTTTCCACAGCAGGTTTGTAGAACTCACACGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAACTACNTGAAGAGAGATGAAAGACTCTCCAGTTCTTTAGAAAGGAACAAATTTTAT
TCCTTTGCATTGGATAAGACAATCACACCGGACACTAAGGCTTTGCTTGAAAGAGCTAAA
TCCCTCTCTTCCTCTCGAGAGGAAAACTGGTCTTTTCTCGATTGGGATTCCCGATTTGCT
AATTTTCGGAACAACAAAGATAAAGAAAAGGTAGACTCTGCTCCAAGACCTATTCCATCC
TGGTACATGAAAAAGAAGAAAATTCGGACTGATTCAGAAGGAAAAATGGATGATAAAAAA
GATGACCATAAAGAAGAAGAACAGGAAAGACAAGAGTTATTTGCTTCCCGTTTTTTACAC
AGCTCAATCTTTGAACAAGATTCCAAGCGACTGCAGCATCTAGAAAGAAAAGATGAAGAA
TCCGACTTTGTTTCTGGCAGGTTGTACGGGAGACAGACATCTGATGGAGTGAATAGCACG
AGTGATTTCATTCAAGAGCCAGTAGTTCTTTTCCACAGCAGGTTTGTAGAACTCACACGA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-540, gnl|bosTau2|chr16 (36852022-36852558)
               

               
               3-540, gnl|Hg17|chr1 (16002281-16002817)
               

               
               3-540, gnl|Mm7|chr4 (140855468-140854932)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-540, gnl|bosTau2|chr16 (36852022-36852558)
               

               
               3-540, gnl|Hg17|chr1 (16002281-16002817)
               

               
               3-540, gnl|Mm7|chr4 (140855468-140854932)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               vin (0.332557)
               

               
               cut (0.169924)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               cut (0.169924)

	3-540, gnl\|bosTau2\|chr16 (36852022-36852558)
	3-540, gnl\|Hg17\|chr1 (16002281-16002817)
	3-540, gnl\|Mm7\|chr4 (140855468-140854932)