Non-Coding RNA Search

Ss1.1-rvin014_p21.5

Sequence:


               
               GATAACACACTATTTTCATATTTTTGTTTATTTGCACAACTTTTGAACCAGATTACTGGT
TGAAATCCAACAATACACAATTTATAAAGTAAAAAGATTTTATAAGGAAAACAAATAAAA
TAGCTAGTGCTAGGAAATGGAGCAAAAGGTTTGTATTTGGTTATGGGTTTTTTGGGTTTT
GGTTTTTGGCTTTTTAAGGAAAACCCTGCCTAAGATGTCAATCTTGTAAAAAGTGTGTAT
TTGGAATTTTCTCTGTTTTAATATAGAATATTATTATAAAGTCAAAATATAATAAATTGT
TTTCAGATTTGGAGTTTAAGATATAGCAGTAGAAGTGGCTTTGATTCTTTTAGATGTCTC
ATAAAATGAGACTTTTTATATGTTAATGTATAATAAAACTGAAACAAGATTATTTTCCAT
TTGAAATTTTTGTATAGTTTAAAAATGCTTCCATATTCTTTGTTGATATTGTGCCACTGC
AGAACTTTAGTGCAGAGTTTATATTTAGCTAAACTGTTATGTTAATTAAGAAATGCATAA
ATCTTTTATTCTTAATATTTGTAATTCTAAATAAATTGATCTATGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATAACACACTATTTTCATATTTTTGTTTATTTGCACAACTTTTGAACCAGATTACTGGT
TGAAATCCAACAATACACAATTTATAAAGTAAAAAGATTTTATAAGGAAAACAAATAAAA
TAGCTAGTGCTAGGAAATGGAGCAAAAGGTTTGTATTTGGTTATGGGTTTTTTGGGTTTT
GGTTTTTGGCTTTTTAAGGAAAACCCTGCCTAAGATGTCAATCTTGTAAAAAGTGTGTAT
TTGGAATTTTCTCTGTTTTAATATAGAATATTATTATAAAGTCAAAATATAATAAATTGT
TTTCAGATTTGGAGTTTAAGATATAGCAGTAGAAGTGGCTTTGATTCTTTTAGATGTCTC
ATAAAATGAGACTTTTTATATGTTAATGTATAATAAAACTGAAACAAGATTATTTTCCAT
TTGAAATTTTTGTATAGTTTAAAAATGCTTCCATATTCTTTGTTGATATTGTGCCACTGC
AGAACTTTAGTGCAGAGTTTATATTTAGCTAAACTGTTATGTTAATTAAGAAATGCATAA
ATCTTTTATTCTTAATATTTGTAATTCTAAATAAATTGATCTATGAAA

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-588, gnl|bosTau2|chr16 (17639132-17638550)
               

               
               1-588, gnl|Hg17|chr1 (222726157-222725597)
               

               
               1-588, gnl|Mm7|chr1 (180669878-180670432)
               


               
               255-575, gnl|bosTau2|chr1 (3589950-3589627)
               

               
               255-575, gnl|Mm7|chr1 (180670112-180670419)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-588, gnl|bosTau2|chr16 (17639132-17638550)
               

               
               1-588, gnl|Hg17|chr1 (222726157-222725597)
               

               
               1-588, gnl|Mm7|chr1 (180669878-180670432)
               


               
               255-575, gnl|bosTau2|chr1 (3589950-3589627)
               

               
               255-575, gnl|Mm7|chr1 (180670112-180670419)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               vin (0.332557)
               

               
               pgl (0.118483)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               pgl (0.118483)

	1-588, gnl\|bosTau2\|chr16 (17639132-17638550)
	1-588, gnl\|Hg17\|chr1 (222726157-222725597)
	1-588, gnl\|Mm7\|chr1 (180669878-180670432)

	255-575, gnl\|bosTau2\|chr1 (3589950-3589627)
	255-575, gnl\|Mm7\|chr1 (180670112-180670419)