Non-Coding RNA Search

Ss1.1-rvin015_g24.5

Sequence:


               
               GCTTCTTCACAAAACTCCATGTCTGTATGAGTACAAAGTTTAAAAAAGAAAAAAAAAAAA
AAAAGACTGCTTTCTTAAAATGCCTACTGTGACAGCCACTCAGGCCTCCTTCTTTTCTCC
TTTGTCCCTCGATTATTGTTGATGTATGGGATTTTTGCCCCTGAGAAGGCATGTCTTTGA
ATTTGGAGGTCATGTCCATGATATGGATTAATGAAAGCTATAATTCATTTGGGGATGAAA
CTTGTCCTCTTACCCAATTGGCATCATCCTGTAACCTACTGAGTTAAATGCAATGGAACA
ACAGCTCTCCAAGCACTTTTAAACTCTGCCTTCATTTGAAAGTTCAGTGTATTATTTTGT
TAAGAAGCAGTGTGGTATGGCTGGGTAAAGAAGAAAAAAGGAAAGCATGTTGTCACTTGA
GTGAGACTGCCTTAGAAATGTTACCAAGTCAGGGTTGGGTGTTTCCTGTCCTTCGGAAGA
GAACAGGCATAAACAGCACCTTCCTCATGCTGTAGCTACAAGGAAAGTACCATGACTGGG
ATTAGAGATGCTTCCTTAGCTGATTTTTAATCAAGTGTAAATTTAAATACATAGCAAAGG
ATGGGAGTGAAATGATGTGGTATTTTTACAGGTTCTATTTCATGTAAACTTTGTATCTTG
AATGAAATATGAACTACCTAAAGAATGAAATTGGAAATTCAGTGGGAGAAACAGTTGTAG
AATCAAAGACCTATATTTAAATTTTGAACCTAAGTTACTGGATTTTGTGCACATTAATTT
CTTTAAGCTTCCATTTCTTCTTATGTAAAACTGAGGAAACTCTTGTAGAATTATTCTAAA
GATCAAATAAAGACTTTAAAACAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTCTTCACAAAACTCCATGTCTGTATGAGTACAAAGTTTAAAAAAGAAAAAAAAAAAA
AAAAGACTGCTTTCTTAAAATGCCTACTGTGACAGCCACTCAGGCCTCCTTCTTTTCTCC
TTTGTCCCTCGATTATTGTTGATGTATGGGATTTTTGCCCCTGAGAAGGCATGTCTTTGA
ATTTGGAGGTCATGTCCATGATATGGATTAATGAAAGCTATAATTCATTTGGGGATGAAA
CTTGTCCTCTTACCCAATTGGCATCATCCTGTAACCTACTGAGTTAAATGCAATGGAACA
ACAGCTCTCCAAGCACTTTTAAACTCTGCCTTCATTTGAAAGTTCAGTGTATTATTTTGT
TAAGAAGCAGTGTGGTATGGCTGGGTAAAGAAGAAAAAAGGAAAGCATGTTGTCACTTGA
GTGAGACTGCCTTAGAAATGTTACCAAGTCAGGGTTGGGTGTTTCCTGTCCTTCGGAAGA
GAACAGGCATAAACAGCACCTTCCTCATGCTGTAGCTACAAGGAAAGTACCATGACTGGG
ATTAGAGATGCTTCCTTAGCTGATTTTTAATCAAGTGTAAATTTAAATACATAGCAAAGG
ATGGGAGTGAAATGATGTGGTATTTTTACAGGTTCTATTTCATGTAAACTTTGTATCTTG
AATGAAATATGAACTACCTAAAGAATGAAATTGGAAATTCAGTGGGAGAAACAGTTGTAG
AATCAAAGACCTATATTTAAATTTTGAACCTAAGTTACTGGATTTTGTGCACATTAATTT
CTTTAAGCTTCCATTTCTTCTTATGTAAAACTGAGGAAACTCTTGTAGAATTATTCTAAA
GATCAAATAAAGACTTTAAAACAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               1-710, gnl|bosTau2|chr16 (28137345-28136630)
               

               
               1-710, gnl|Hg17|chr11 (58145434-58146128)
               

               
               1-710, gnl|Mm7|chr19 (12446769-12446138)
               


               
               753-880, gnl|bosTau2|chr16 (28136335-28136202)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-710, gnl|bosTau2|chr16 (28137345-28136630)
               

               
               1-710, gnl|Hg17|chr11 (58145434-58146128)
               

               
               1-710, gnl|Mm7|chr19 (12446769-12446138)
               


               
               753-880, gnl|bosTau2|chr16 (28136335-28136202)

Expressed library(ies): 21 entry(ies)

More info

Expressed library(ies): 21 entry(ies)

Help | Less info


               
               vin (0.997672)
               

               
               cbe (0.478469)
               

               
               tbr (0.462535)
               

               
               cte (0.29274)
               

               
               lin (0.291206)
               

               
               ste (0.270416)
               

               
               thg (0.253582)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               ssp (0.13552)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.997672)
               

               
               cbe (0.478469)
               

               
               tbr (0.462535)
               

               
               cte (0.29274)
               

               
               lin (0.291206)
               

               
               ste (0.270416)
               

               
               thg (0.253582)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               ssp (0.13552)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

	1-710, gnl\|bosTau2\|chr16 (28137345-28136630)
	1-710, gnl\|Hg17\|chr11 (58145434-58146128)
	1-710, gnl\|Mm7\|chr19 (12446769-12446138)

	753-880, gnl\|bosTau2\|chr16 (28136335-28136202)

	vin (0.997672)
	cbe (0.478469)
	tbr (0.462535)
	cte (0.29274)
	lin (0.291206)
	ste (0.270416)
	thg (0.253582)
	mgp (0.230681)
	ece (0.229305)
	mas (0.210305)
	tes (0.207814)
	mga (0.160205)
	isp (0.150376)
	ski (0.146735)
	ssp (0.13552)
	kid (0.129735)
	ova (0.129132)
	sug (0.127291)
	jca (0.11396)
	spc (0.113366)
	ldo (0.0970026)