Non-Coding RNA Search

Ss1.1-rvin016_j19.5

Sequence:


               
               TAGAACAGGTCAACTCAAAATTGAGTTATGAGAATATAGTAACATCTCTTTGTTAAATAT
GCAGGTGTATCCCTATTTTTGACAAAAAAAAATTGCATTGTTCAGTTATTTTTTGACTTT
GCATTACCATATTAAGGCTGAATGACCTTGATACTCCAGTGGATTATTTTAAAATAATTA
TTTCAAATTTAAGTAGCATCCAAAGTGTAACTTTAGTGTTATGCTTTGTATTTTAAACCC
AAGGTCTTACCTTATTAAGAAAGATGCTCTGTTGTCCTCCACAAAATAGTTATTTCCTCA
TATTAAAATAGTTATCCCATACTTTTTAAGAACTATAAAAACAATTTCAAAGAGACATTT
GGAAAAGTTTTCTCCGTTCTGGCAATTAATGCTTCCATTTATTTAAAGAAGAATATAATT
GGAATCTTAAATTTAAAAATATATGTGAAAGGGTACTTGCTATGAAATACTAAAAAAAAA
AAAAAAAAAAGGGATACAGCTTCTTTTAAAACCCTTGTTTCAGGCCATATCTGACTTCAT
GGAACTTCTGAAACATCATTCAATTTTTTATTTAAGAGCATTTTGTACTGCTGTCTCTGA
TTATCATGAAAAATTCTGTAATTCTACAGTGTTTCTGGTTTTATTTTTAAGTTTTCCATC
TGTACCACAGTCCAATTAGCTACCATTTTCCCCATTCCTTGGGCTTTCTGTAGATCAGTG
GACGTTAGGTTTAAACTTCTGTTTTCTTTGATGAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGAACAGGTCAACTCAAAATTGAGTTATGAGAATATAGTAACATCTCTTTGTTAAATAT
GCAGGTGTATCCCTATTTTTGACAAAAAAAAATTGCATTGTTCAGTTATTTTTTGACTTT
GCATTACCATATTAAGGCTGAATGACCTTGATACTCCAGTGGATTATTTTAAAATAATTA
TTTCAAATTTAAGTAGCATCCAAAGTGTAACTTTAGTGTTATGCTTTGTATTTTAAACCC
AAGGTCTTACCTTATTAAGAAAGATGCTCTGTTGTCCTCCACAAAATAGTTATTTCCTCA
TATTAAAATAGTTATCCCATACTTTTTAAGAACTATAAAAACAATTTCAAAGAGACATTT
GGAAAAGTTTTCTCCGTTCTGGCAATTAATGCTTCCATTTATTTAAAGAAGAATATAATT
GGAATCTTAAATTTAAAAATATATGTGAAAGGGTACTTGCTATGAAATACTAAAAAAAAA
AAAAAAAAAAGGGATACAGCTTCTTTTAAAACCCTTGTTTCAGGCCATATCTGACTTCAT
GGAACTTCTGAAACATCATTCAATTTTTTATTTAAGAGCATTTTGTACTGCTGTCTCTGA
TTATCATGAAAAATTCTGTAATTCTACAGTGTTTCTGGTTTTATTTTTAAGTTTTCCATC
TGTACCACAGTCCAATTAGCTACCATTTTCCCCATTCCTTGGGCTTTCTGTAGATCAGTG
GACGTTAGGTTTAAACTTCTGTTTTCTTTGATGAAG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               153-303, + strand, RNAz p=0.949968
               

               
               596-756, - strand, RNAz p=0.805908

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               153-303, + strand, RNAz p=0.949968
               

               
               596-756, - strand, RNAz p=0.805908

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-756, gnl|bosTau2|chr22 (1297786-1297010)
               

               
               1-756, gnl|canFam2|chr23 (17491354-17490250)
               

               
               1-756, gnl|dasNov1|scaffold_2105 (159166-160155)
               

               
               1-756, gnl|echTel1|scaffold_286369 (38307-37183)
               

               
               1-756, gnl|galGal2|chr2 (38722639-38723521)
               

               
               1-756, gnl|hg17|chr3 (30025557-30026626)
               

               
               1-756, gnl|Hg17|chr3 (30026081-30026852)
               

               
               1-756, gnl|loxAfr1|scaffold_960 (123050-121934)
               

               
               1-756, gnl|mm7|chr9 (116246379-116245331)
               

               
               1-756, gnl|Mm7|chr9 (116245864-116245106)
               

               
               1-756, gnl|monDom2|scaffold_7 (86009485-86010587)
               

               
               1-756, gnl|oryCun1|scaffold_209523 (73154-72112)
               

               
               1-756, gnl|panTro1|chr2 (30996948-30998011)
               

               
               1-756, gnl|rheMac2|chr2 (172465740-172466803)
               

               
               1-756, gnl|rn3|chr8 (121124234-121123152)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-756, gnl|bosTau2|chr22 (1297786-1297010)
               

               
               1-756, gnl|canFam2|chr23 (17491354-17490250)
               

               
               1-756, gnl|dasNov1|scaffold_2105 (159166-160155)
               

               
               1-756, gnl|echTel1|scaffold_286369 (38307-37183)
               

               
               1-756, gnl|galGal2|chr2 (38722639-38723521)
               

               
               1-756, gnl|hg17|chr3 (30025557-30026626)
               

               
               1-756, gnl|Hg17|chr3 (30026081-30026852)
               

               
               1-756, gnl|loxAfr1|scaffold_960 (123050-121934)
               

               
               1-756, gnl|mm7|chr9 (116246379-116245331)
               

               
               1-756, gnl|Mm7|chr9 (116245864-116245106)
               

               
               1-756, gnl|monDom2|scaffold_7 (86009485-86010587)
               

               
               1-756, gnl|oryCun1|scaffold_209523 (73154-72112)
               

               
               1-756, gnl|panTro1|chr2 (30996948-30998011)
               

               
               1-756, gnl|rheMac2|chr2 (172465740-172466803)
               

               
               1-756, gnl|rn3|chr8 (121124234-121123152)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               vin (0.332557)
               

               
               fat (0.147427)
               

               
               jca (0.11396)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               fat (0.147427)
               

               
               jca (0.11396)

	153-303, + strand, RNAz p=0.949968
	596-756, - strand, RNAz p=0.805908

	1-756, gnl\|bosTau2\|chr22 (1297786-1297010)
	1-756, gnl\|canFam2\|chr23 (17491354-17490250)
	1-756, gnl\|dasNov1\|scaffold_2105 (159166-160155)
	1-756, gnl\|echTel1\|scaffold_286369 (38307-37183)
	1-756, gnl\|galGal2\|chr2 (38722639-38723521)
	1-756, gnl\|hg17\|chr3 (30025557-30026626)
	1-756, gnl\|Hg17\|chr3 (30026081-30026852)
	1-756, gnl\|loxAfr1\|scaffold_960 (123050-121934)
	1-756, gnl\|mm7\|chr9 (116246379-116245331)
	1-756, gnl\|Mm7\|chr9 (116245864-116245106)
	1-756, gnl\|monDom2\|scaffold_7 (86009485-86010587)
	1-756, gnl\|oryCun1\|scaffold_209523 (73154-72112)
	1-756, gnl\|panTro1\|chr2 (30996948-30998011)
	1-756, gnl\|rheMac2\|chr2 (172465740-172466803)
	1-756, gnl\|rn3\|chr8 (121124234-121123152)