Ss1.1-rvin01_a24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGATGCAAAAGGGCGAGAGGTCAATGATCTTAAAAGAAAATCTCCTTCAGATCTTTGGA AAGAAGATTTAGCAGCTTTTGTTGAAGAACTGGATAAAGTGGAAGCGCAAGAACGAGAAG ATGTTCTGGCTGGAATGGCTGGAAAAGCAATAAAAGGAAAAATTGGCAAACCTAAGGTGA AGAAACTTCAACTGGAAGAGACAATGCCCTCACCTTTTGGGAGAAGAATAGTTCCTGAAA TTACTGCTATGAAGGCAGATGCCAGTAAAAAGTTACTGAAGAAGAAAAAGGGTGATCTTG ATACCACAGCAGTAAAAGTGGAGTTTGATGAAGAATTCAGTGGAACTCCGGTGGAAGGTA CAGGAGAAGAGGCACTGATCCAGTCAGCTCCTATAAATAAAGGTCCCAAACCCAAAAGGG AGAAAAAGGAGCCTGGTACCAGGGTGAGAAAAACACCTACATCATCTGGTAAACCCAGTG CAAAGAAAGTGAAGAAACGGAATCCTTGGTCAGATGATGAATCCAAGTCAGAAAGTGACT TGGAAGAAACAGAACCAGTGGTTATTCCAAGAGATTCTTTACTTAGAAGAGCTGCTGCTG AAAGGCCGAAGTACACATTTGATTTCTCAGAAGAAGAAGATGAGGATGCTGATGATGACG AGGACAATAATGACTTAGAAGAATTGAAAGTTAAAGCATCCCCTGTGACAAATGACGGGG AAGATGAGTCTGTTCCTTCAGATGGCCTCGATAAGGATGAATATACATTTTCACCAGGCA AATCAAAAGCTACTCCAGAAAAGTCTTCCCATGATAAGAAAAGTCAGGATTTTGGGAATC TCTTCTCATTTCCTTCATACTCTCAGAAGTCAGAAGATGATTCAGCCAAATTTGACAGTA ATGAAGAAGATTCTGCTTCTGTTTTTTCACCATCATTTGGTCTGAAACAAACAGAAAAAG TTCCAAGTAAAACAGTAGCTGCTAAAAAGGGAAAACCATCTTTAGATACAACCCCTAAGC CCAAGAGAACCCCCAAACAGAAGAAAGTAGAGACCATCAACTCTGACTCGGATTCTGAAT TTGGCATTCCAAAGAAGACGGCACCAAAAGGTAAAGGCCGAGGAGCAAAGAAAAGGAAAG CATCTGGCTCTGAAAATGAAGGCGATTATAACCCCGGCAGGAGAACATCCAAAACAACAA GCAAGAAACCGAAGAAAACATCTTTTGATCAGGATTCAGATGTGGACCTCTTCCCATCAG ACTTCACTGCTGAACCACCTTCTCTGCCACGGACCGGTCGGGCTAGGAAAGAAGTGAAAT ATTTTGCAGAGTCTGATGAAGAAGAAGATGTTGATTTTGCAATGTTTAATTAAGTGCCCA AAGAGCACAGAAACATTTTTCAGCAGATAACTTGTGTTGTCTTTTTGTCTTTTCTGTCTC AGACTTTTGTACATCTGGCTTATTTTAATGTGATGATGTAATTGATGGTTTTTTATTATT GTGGTAGGCCTTTTAACATTTTGTTCTTACACATACAGTTTTATGCTCTTTTTTACTCAT TGAAATGTCATGTACTGTCTGATTGGCTTGTAGAATTGTTATAGACTGTTGTGCATTAGC ACAGATTTTAACTGTCCTGACTGCAGATTACAGACCTGCTTTTTGAAATGAAATTTAAAC ATTAAAAATGGAACTGTGAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGATGCAAAAGGGCGAGAGGTCAATGATCTTAAAAGAAAATCTCCTTCAGATCTTTGGA AAGAAGATTTAGCAGCTTTTGTTGAAGAACTGGATAAAGTGGAAGCGCAAGAACGAGAAG ATGTTCTGGCTGGAATGGCTGGAAAAGCAATAAAAGGAAAAATTGGCAAACCTAAGGTGA AGAAACTTCAACTGGAAGAGACAATGCCCTCACCTTTTGGGAGAAGAATAGTTCCTGAAA TTACTGCTATGAAGGCAGATGCCAGTAAAAAGTTACTGAAGAAGAAAAAGGGTGATCTTG ATACCACAGCAGTAAAAGTGGAGTTTGATGAAGAATTCAGTGGAACTCCGGTGGAAGGTA CAGGAGAAGAGGCACTGATCCAGTCAGCTCCTATAAATAAAGGTCCCAAACCCAAAAGGG AGAAAAAGGAGCCTGGTACCAGGGTGAGAAAAACACCTACATCATCTGGTAAACCCAGTG CAAAGAAAGTGAAGAAACGGAATCCTTGGTCAGATGATGAATCCAAGTCAGAAAGTGACT TGGAAGAAACAGAACCAGTGGTTATTCCAAGAGATTCTTTACTTAGAAGAGCTGCTGCTG AAAGGCCGAAGTACACATTTGATTTCTCAGAAGAAGAAGATGAGGATGCTGATGATGACG AGGACAATAATGACTTAGAAGAATTGAAAGTTAAAGCATCCCCTGTGACAAATGACGGGG AAGATGAGTCTGTTCCTTCAGATGGCCTCGATAAGGATGAATATACATTTTCACCAGGCA AATCAAAAGCTACTCCAGAAAAGTCTTCCCATGATAAGAAAAGTCAGGATTTTGGGAATC TCTTCTCATTTCCTTCATACTCTCAGAAGTCAGAAGATGATTCAGCCAAATTTGACAGTA ATGAAGAAGATTCTGCTTCTGTTTTTTCACCATCATTTGGTCTGAAACAAACAGAAAAAG TTCCAAGTAAAACAGTAGCTGCTAAAAAGGGAAAACCATCTTTAGATACAACCCCTAAGC CCAAGAGAACCCCCAAACAGAAGAAAGTAGAGACCATCAACTCTGACTCGGATTCTGAAT TTGGCATTCCAAAGAAGACGGCACCAAAAGGTAAAGGCCGAGGAGCAAAGAAAAGGAAAG CATCTGGCTCTGAAAATGAAGGCGATTATAACCCCGGCAGGAGAACATCCAAAACAACAA GCAAGAAACCGAAGAAAACATCTTTTGATCAGGATTCAGATGTGGACCTCTTCCCATCAG ACTTCACTGCTGAACCACCTTCTCTGCCACGGACCGGTCGGGCTAGGAAAGAAGTGAAAT ATTTTGCAGAGTCTGATGAAGAAGAAGATGTTGATTTTGCAATGTTTAATTAAGTGCCCA AAGAGCACAGAAACATTTTTCAGCAGATAACTTGTGTTGTCTTTTTGTCTTTTCTGTCTC AGACTTTTGTACATCTGGCTTATTTTAATGTGATGATGTAATTGATGGTTTTTTATTATT GTGGTAGGCCTTTTAACATTTTGTTCTTACACATACAGTTTTATGCTCTTTTTTACTCAT TGAAATGTCATGTACTGTCTGATTGGCTTGTAGAATTGTTATAGACTGTTGTGCATTAGC ACAGATTTTAACTGTCCTGACTGCAGATTACAGACCTGCTTTTTGAAATGAAATTTAAAC ATTAAAAATGGAACTGTGAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 135-1359, + strand, RNAz p=0.995749 | |
| 448-551, - strand, RNAz p=0.875908 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 135-1359, + strand, RNAz p=0.995749 | |
| 448-551, - strand, RNAz p=0.875908 |
| Aligned organism(s): 68 entry(ies) | More info |
| Aligned organism(s): 68 entry(ies) | Help | Less info |
| 96-291, gnl|bosTau2|chr27 (26695331-26695526) | |
| 96-291, gnl|canFam2|chr23 (21237613-21237350) | |
| 96-291, gnl|danRer3|chrNA (237559133-237558897) | |
| 96-291, gnl|dasNov1|scaffold_262 (85186-85440) | |
| 96-291, gnl|echTel1|scaffold_324842 (10249-10495) | |
| 96-291, gnl|fr1|chrUn (39850179-39849947) | |
| 96-291, gnl|galGal2|chr2 (36960177-36960424) | |
| 96-291, gnl|hg17|chr3 (25628997-25629245) | |
| 96-291, gnl|Hg17|chr3 (25629204-25629009) | |
| 96-291, gnl|loxAfr1|scaffold_9754 (31973-32221) | |
| 96-291, gnl|mm7|chr14 (14233695-14233458) | |
| 96-291, gnl|Mm7|chr14 (14233486-14233681) | |
| 96-291, gnl|monDom2|scaffold_7 (81503906-81504146) | |
| 96-291, gnl|oryCun1|scaffold_198774 (3877-4127) | |
| 96-291, gnl|panTro1|chr2 (26567082-26567330) | |
| 96-291, gnl|rheMac2|chr2 (168096074-168096325) | |
| 96-291, gnl|rn3|chr15_random (335885-336128) | |
| 96-291, gnl|tetNig1|chrUn_random (10440669-10440464) | |
| 96-291, gnl|xenTro1|scaffold_43 (2339482-2339744) | |
| 435-597, gnl|bosTau2|chr27 (26698224-26698386) | |
| 435-597, gnl|canFam2|chr23 (21241077-21240854) | |
| 435-597, gnl|danRer3|chrNA (237560916-237560748) | |
| 435-597, gnl|dasNov1|scaffold_262 (82087-82299) | |
| 435-597, gnl|fr1|chrUn (39850662-39850484) | |
| 435-597, gnl|galGal2|chr2 (36958238-36958445) | |
| 435-597, gnl|hg17|chr3 (25625632-25625842) | |
| 435-597, gnl|Hg17|chr3 (25625840-25625678) | |
| 435-597, gnl|loxAfr1|scaffold_9754 (28874-29094) | |
| 435-597, gnl|mm7|chr14 (14236066-14235851) | |
| 435-597, gnl|Mm7|chr14 (14235851-14236013) | |
| 435-597, gnl|monDom2|scaffold_7 (81500408-81500607) | |
| 435-597, gnl|oryCun1|scaffold_198774 (5-219) | |
| 435-597, gnl|panTro1|chr2 (26563714-26563924) | |
| 435-597, gnl|rheMac2|chr2 (168092558-168092792) | |
| 435-597, gnl|rn3|chr15_random (333419-333634) | |
| 435-597, gnl|tetNig1|chrUn_random (10441094-10440941) | |
| 435-597, gnl|xenTro1|scaffold_43 (2337532-2337769) | |
| 879-991, gnl|bosTau2|chr27 (26705212-26705324) | |
| 879-991, gnl|canFam2|chr23 (21245221-21245099) | |
| 879-991, gnl|dasNov1|scaffold_262 (78837-78960) | |
| 879-991, gnl|echTel1|scaffold_292156 (33638-33516) | |
| 879-991, gnl|galGal2|chr2 (36956525-36956647) | |
| 879-991, gnl|hg17|chr3 (25621250-25621372) | |
| 879-991, gnl|Hg17|chr3 (25621366-25621254) | |
| 879-991, gnl|loxAfr1|scaffold_42034 (37425-37547) | |
| 879-991, gnl|mm7|chr14 (14240621-14240499) | |
| 879-991, gnl|Mm7|chr14 (14240503-14240615) | |
| 879-991, gnl|monDom2|scaffold_7 (81493240-81493362) | |
| 879-991, gnl|oryCun1|scaffold_56281 (1410-1532) | |
| 879-991, gnl|panTro1|chr2 (26559330-26559452) | |
| 879-991, gnl|rheMac2|chr2 (168088210-168088332) | |
| 879-991, gnl|rn3|chr15_random (328976-329098) | |
| 1204-1698, gnl|bosTau2|chr27 (26709306-26709800) | |
| 1204-1698, gnl|canFam2|chr23 (21250430-21249887) | |
| 1204-1698, gnl|danRer3|chr19 (14735495-14734922) | |
| 1204-1698, gnl|dasNov1|scaffold_262 (72815-73363) | |
| 1204-1698, gnl|echTel1|scaffold_292156 (40646-40114) | |
| 1204-1698, gnl|galGal2|chr2 (36951049-36951590) | |
| 1204-1698, gnl|hg17|chr3 (25614429-25614975) | |
| 1204-1698, gnl|Hg17|chr3 (25614974-25614479) | |
| 1204-1698, gnl|loxAfr1|scaffold_42034 (31715-32264) | |
| 1204-1698, gnl|mm7|chr14 (14245988-14245447) | |
| 1204-1698, gnl|Mm7|chr14 (14245446-14245936) | |
| 1204-1698, gnl|monDom2|scaffold_7 (81483846-81484379) | |
| 1204-1698, gnl|oryCun1|scaffold_215364 (5322-4778) | |
| 1204-1698, gnl|panTro1|chr2 (26552542-26553088) | |
| 1204-1698, gnl|rheMac2|chr2 (168081530-168082087) | |
| 1204-1698, gnl|rn3|chr15_random (323743-324284) |
| Aligned organism(s): 68 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 96-291, gnl|bosTau2|chr27 (26695331-26695526) | |
| 96-291, gnl|canFam2|chr23 (21237613-21237350) | |
| 96-291, gnl|danRer3|chrNA (237559133-237558897) | |
| 96-291, gnl|dasNov1|scaffold_262 (85186-85440) | |
| 96-291, gnl|echTel1|scaffold_324842 (10249-10495) | |
| 96-291, gnl|fr1|chrUn (39850179-39849947) | |
| 96-291, gnl|galGal2|chr2 (36960177-36960424) | |
| 96-291, gnl|hg17|chr3 (25628997-25629245) | |
| 96-291, gnl|Hg17|chr3 (25629204-25629009) | |
| 96-291, gnl|loxAfr1|scaffold_9754 (31973-32221) | |
| 96-291, gnl|mm7|chr14 (14233695-14233458) | |
| 96-291, gnl|Mm7|chr14 (14233486-14233681) | |
| 96-291, gnl|monDom2|scaffold_7 (81503906-81504146) | |
| 96-291, gnl|oryCun1|scaffold_198774 (3877-4127) | |
| 96-291, gnl|panTro1|chr2 (26567082-26567330) | |
| 96-291, gnl|rheMac2|chr2 (168096074-168096325) | |
| 96-291, gnl|rn3|chr15_random (335885-336128) | |
| 96-291, gnl|tetNig1|chrUn_random (10440669-10440464) | |
| 96-291, gnl|xenTro1|scaffold_43 (2339482-2339744) | |
| 435-597, gnl|bosTau2|chr27 (26698224-26698386) | |
| 435-597, gnl|canFam2|chr23 (21241077-21240854) | |
| 435-597, gnl|danRer3|chrNA (237560916-237560748) | |
| 435-597, gnl|dasNov1|scaffold_262 (82087-82299) | |
| 435-597, gnl|fr1|chrUn (39850662-39850484) | |
| 435-597, gnl|galGal2|chr2 (36958238-36958445) | |
| 435-597, gnl|hg17|chr3 (25625632-25625842) | |
| 435-597, gnl|Hg17|chr3 (25625840-25625678) | |
| 435-597, gnl|loxAfr1|scaffold_9754 (28874-29094) | |
| 435-597, gnl|mm7|chr14 (14236066-14235851) | |
| 435-597, gnl|Mm7|chr14 (14235851-14236013) | |
| 435-597, gnl|monDom2|scaffold_7 (81500408-81500607) | |
| 435-597, gnl|oryCun1|scaffold_198774 (5-219) | |
| 435-597, gnl|panTro1|chr2 (26563714-26563924) | |
| 435-597, gnl|rheMac2|chr2 (168092558-168092792) | |
| 435-597, gnl|rn3|chr15_random (333419-333634) | |
| 435-597, gnl|tetNig1|chrUn_random (10441094-10440941) | |
| 435-597, gnl|xenTro1|scaffold_43 (2337532-2337769) | |
| 879-991, gnl|bosTau2|chr27 (26705212-26705324) | |
| 879-991, gnl|canFam2|chr23 (21245221-21245099) | |
| 879-991, gnl|dasNov1|scaffold_262 (78837-78960) | |
| 879-991, gnl|echTel1|scaffold_292156 (33638-33516) | |
| 879-991, gnl|galGal2|chr2 (36956525-36956647) | |
| 879-991, gnl|hg17|chr3 (25621250-25621372) | |
| 879-991, gnl|Hg17|chr3 (25621366-25621254) | |
| 879-991, gnl|loxAfr1|scaffold_42034 (37425-37547) | |
| 879-991, gnl|mm7|chr14 (14240621-14240499) | |
| 879-991, gnl|Mm7|chr14 (14240503-14240615) | |
| 879-991, gnl|monDom2|scaffold_7 (81493240-81493362) | |
| 879-991, gnl|oryCun1|scaffold_56281 (1410-1532) | |
| 879-991, gnl|panTro1|chr2 (26559330-26559452) | |
| 879-991, gnl|rheMac2|chr2 (168088210-168088332) | |
| 879-991, gnl|rn3|chr15_random (328976-329098) | |
| 1204-1698, gnl|bosTau2|chr27 (26709306-26709800) | |
| 1204-1698, gnl|canFam2|chr23 (21250430-21249887) | |
| 1204-1698, gnl|danRer3|chr19 (14735495-14734922) | |
| 1204-1698, gnl|dasNov1|scaffold_262 (72815-73363) | |
| 1204-1698, gnl|echTel1|scaffold_292156 (40646-40114) | |
| 1204-1698, gnl|galGal2|chr2 (36951049-36951590) | |
| 1204-1698, gnl|hg17|chr3 (25614429-25614975) | |
| 1204-1698, gnl|Hg17|chr3 (25614974-25614479) | |
| 1204-1698, gnl|loxAfr1|scaffold_42034 (31715-32264) | |
| 1204-1698, gnl|mm7|chr14 (14245988-14245447) | |
| 1204-1698, gnl|Mm7|chr14 (14245446-14245936) | |
| 1204-1698, gnl|monDom2|scaffold_7 (81483846-81484379) | |
| 1204-1698, gnl|oryCun1|scaffold_215364 (5322-4778) | |
| 1204-1698, gnl|panTro1|chr2 (26552542-26553088) | |
| 1204-1698, gnl|rheMac2|chr2 (168081530-168082087) | |
| 1204-1698, gnl|rn3|chr15_random (323743-324284) |
| Expressed library(ies): 41 entry(ies) | More info |
| Expressed library(ies): 41 entry(ies) | Help | Less info |
| thg (1.26791) | |
| mgp (1.1534) | |
| liv (0.731422) | |
| vin (0.665115) | |
| aor (0.585823) | |
| cte (0.58548) | |
| cmu (0.55918) | |
| nca (0.547495) | |
| gul (0.532765) | |
| tra (0.492368) | |
| cbe (0.478469) | |
| fty (0.351679) | |
| med (0.348756) | |
| fhi (0.339155) | |
| eje (0.296501) | |
| lin (0.291206) | |
| spl (0.286369) | |
| ova (0.258264) | |
| pan (0.23596) | |
| nms (0.213858) | |
| fcc (0.197785) | |
| sag (0.182715) | |
| sto (0.179824) | |
| sin (0.174948) | |
| rec (0.17307) | |
| eye (0.170503) | |
| mga (0.160205) | |
| fco (0.157208) | |
| ski (0.146735) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| ret (0.128733) | |
| sug (0.127291) | |
| ese (0.126502) | |
| bla (0.124347) | |
| ecc (0.115035) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |
| Expressed library(ies): 41 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| thg (1.26791) | |
| mgp (1.1534) | |
| liv (0.731422) | |
| vin (0.665115) | |
| aor (0.585823) | |
| cte (0.58548) | |
| cmu (0.55918) | |
| nca (0.547495) | |
| gul (0.532765) | |
| tra (0.492368) | |
| cbe (0.478469) | |
| fty (0.351679) | |
| med (0.348756) | |
| fhi (0.339155) | |
| eje (0.296501) | |
| lin (0.291206) | |
| spl (0.286369) | |
| ova (0.258264) | |
| pan (0.23596) | |
| nms (0.213858) | |
| fcc (0.197785) | |
| sag (0.182715) | |
| sto (0.179824) | |
| sin (0.174948) | |
| rec (0.17307) | |
| eye (0.170503) | |
| mga (0.160205) | |
| fco (0.157208) | |
| ski (0.146735) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| ret (0.128733) | |
| sug (0.127291) | |
| ese (0.126502) | |
| bla (0.124347) | |
| ecc (0.115035) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |