Non-Coding RNA Search

Ss1.1-rvin01_g22.5

Sequence:


               
               ACCACTAGATGTTTCTCTAACAAAATGGGTTTATTTGAGATCAACAGATAATTGCAGTTT
GAGGTCTGTAACCAATGGTGAGCCGTGTGCAAGCCCTCCCCTCAGCAAGGGAATGAGAAT
GCTTTCATAAGGGGAAAAGGAAGTTGGAAGGGCTCTAGTAAACACAGAGTCCGTGGCTTT
TCATTGGCTGAGTCCTTGCCAGGAAAAGAGTATTTTCTCCCTGTTGGGTTCTACTTTATT
CACAAGGCCTGAGAGCTCCCCATTCTGGTTTCCTGACTCTATTTAATTGAGGTTTCTGTT
TATTAATTTTTTAATACACTATACCAGCAAACTTGTAGCAGTCATATATGCTGTACTTTT
TGGTTTACTCCGAATTTTCAACTGGCTATAAAAATGTATCAATTAGCACATAGGAAAATA
TACTTTCCTATGACTTAACTTTTTTTGAAAATACTTGTGTACTTAAGAGATATGATTTGT
TAGAAATTGACATCATAAGTTCTTACAAAAGCACCGAAGTCTTTATTTTCAACAGAAAAT
GTAATTAAATTCGTTTTCAGGTATTGCTTAGGTTAAGAAATGTGTGCTTTAGGATCTACT
GGCCAGTTTCTTTTTTTGATCTAAACATATCTGCCTTGATGAATAACAAATTGAACTACC
AAGAAAAAGAAAGAACAAAAGAAAGAAAAGCGTAAAAGAAACCTATGGCAGTAGATTAAA
ATAAGCATATTTTGTCATTAAGAAATATATCAGGTTTACCTGGGGAAAATTCCCTTGACA
TAAATAGCAATCATAACTAGTAAACAGCTGTAGCAATTAAAAGGATTTAGATGACAAGTT
AAAAAGAACCAGGAAACCAATTGATTTTGCTTGAAAGAGTTCTTTATAATTAAAGAAGTT
GACCCCTGCCAGTATTCACTGCTATCCTACCTTGATGGGGAAGAATTCTGCCAGTGAATG
TAATCTGAGCAGCCATTTTAAAATGAAAATGGTTTCATTCCTGAGAGGGCAACAGGATGC
ATGCTTATGTACTGCAGGATGGTATGAAGAGCAGTGGAAGGAGAAATCCTGTAATATCTT
CAATGGCATATCTATTTTTACTTGGTGCTACATCAAATCGAACATGTCATTGTACCAGCT
GTTATGGTTTTTGAAAATGTGGTGCATTTTTATTCTAGGCACTGAAAATACAAATGCCAG
CAAGTGATGCTTATGTATTTGGGGCAGGGCGAACCTTATCTTTCTTTCAATTTTTAAAAA
TTCAATATTGATCTTTTGAAAATGTACCAAGACCTTAAAAAAGGATTATAGTAAATATTT
CATTCTTTATAAAACTTCCTTTCATATCTTATTTGAATGTTAATATGCGCTTTCTAAAAA
TGTTGGGAACCACTAACATTTTATCAAACATACATTAATTATCAATGTGTTAGAATTAAA
TGAAAATTTGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCACTAGATGTTTCTCTAACAAAATGGGTTTATTTGAGATCAACAGATAATTGCAGTTT
GAGGTCTGTAACCAATGGTGAGCCGTGTGCAAGCCCTCCCCTCAGCAAGGGAATGAGAAT
GCTTTCATAAGGGGAAAAGGAAGTTGGAAGGGCTCTAGTAAACACAGAGTCCGTGGCTTT
TCATTGGCTGAGTCCTTGCCAGGAAAAGAGTATTTTCTCCCTGTTGGGTTCTACTTTATT
CACAAGGCCTGAGAGCTCCCCATTCTGGTTTCCTGACTCTATTTAATTGAGGTTTCTGTT
TATTAATTTTTTAATACACTATACCAGCAAACTTGTAGCAGTCATATATGCTGTACTTTT
TGGTTTACTCCGAATTTTCAACTGGCTATAAAAATGTATCAATTAGCACATAGGAAAATA
TACTTTCCTATGACTTAACTTTTTTTGAAAATACTTGTGTACTTAAGAGATATGATTTGT
TAGAAATTGACATCATAAGTTCTTACAAAAGCACCGAAGTCTTTATTTTCAACAGAAAAT
GTAATTAAATTCGTTTTCAGGTATTGCTTAGGTTAAGAAATGTGTGCTTTAGGATCTACT
GGCCAGTTTCTTTTTTTGATCTAAACATATCTGCCTTGATGAATAACAAATTGAACTACC
AAGAAAAAGAAAGAACAAAAGAAAGAAAAGCGTAAAAGAAACCTATGGCAGTAGATTAAA
ATAAGCATATTTTGTCATTAAGAAATATATCAGGTTTACCTGGGGAAAATTCCCTTGACA
TAAATAGCAATCATAACTAGTAAACAGCTGTAGCAATTAAAAGGATTTAGATGACAAGTT
AAAAAGAACCAGGAAACCAATTGATTTTGCTTGAAAGAGTTCTTTATAATTAAAGAAGTT
GACCCCTGCCAGTATTCACTGCTATCCTACCTTGATGGGGAAGAATTCTGCCAGTGAATG
TAATCTGAGCAGCCATTTTAAAATGAAAATGGTTTCATTCCTGAGAGGGCAACAGGATGC
ATGCTTATGTACTGCAGGATGGTATGAAGAGCAGTGGAAGGAGAAATCCTGTAATATCTT
CAATGGCATATCTATTTTTACTTGGTGCTACATCAAATCGAACATGTCATTGTACCAGCT
GTTATGGTTTTTGAAAATGTGGTGCATTTTTATTCTAGGCACTGAAAATACAAATGCCAG
CAAGTGATGCTTATGTATTTGGGGCAGGGCGAACCTTATCTTTCTTTCAATTTTTAAAAA
TTCAATATTGATCTTTTGAAAATGTACCAAGACCTTAAAAAAGGATTATAGTAAATATTT
CATTCTTTATAAAACTTCCTTTCATATCTTATTTGAATGTTAATATGCGCTTTCTAAAAA
TGTTGGGAACCACTAACATTTTATCAAACATACATTAATTATCAATGTGTTAGAATTAAA
TGAAAATTTGGA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               5-316, gnl|bosTau2|chr29 (34539140-34538822)
               


               
               9-312, gnl|bosTau2|chr17 (14632007-14632313)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-316, gnl|bosTau2|chr29 (34539140-34538822)
               


               
               9-312, gnl|bosTau2|chr17 (14632007-14632313)

Expressed library(ies): 24 entry(ies)

More info

Expressed library(ies): 24 entry(ies)

Help | Less info


               
               liv (0.731422)
               

               
               tra (0.61546)
               

               
               fat (0.58971)
               

               
               sin (0.524843)
               

               
               tbr (0.462535)
               

               
               vin (0.332557)
               

               
               kid (0.259471)
               

               
               thg (0.253582)
               

               
               bla (0.248694)
               

               
               pan (0.23596)
               

               
               mgp (0.230681)
               

               
               jej (0.197844)
               

               
               aor (0.195274)
               

               
               rec (0.17307)
               

               
               nco (0.161734)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.731422)
               

               
               tra (0.61546)
               

               
               fat (0.58971)
               

               
               sin (0.524843)
               

               
               tbr (0.462535)
               

               
               vin (0.332557)
               

               
               kid (0.259471)
               

               
               thg (0.253582)
               

               
               bla (0.248694)
               

               
               pan (0.23596)
               

               
               mgp (0.230681)
               

               
               jej (0.197844)
               

               
               aor (0.195274)
               

               
               rec (0.17307)
               

               
               nco (0.161734)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)

	5-316, gnl\|bosTau2\|chr29 (34539140-34538822)

	9-312, gnl\|bosTau2\|chr17 (14632007-14632313)

	liv (0.731422)
	tra (0.61546)
	fat (0.58971)
	sin (0.524843)
	tbr (0.462535)
	vin (0.332557)
	kid (0.259471)
	thg (0.253582)
	bla (0.248694)
	pan (0.23596)
	mgp (0.230681)
	jej (0.197844)
	aor (0.195274)
	rec (0.17307)
	nco (0.161734)
	lun (0.150489)
	isp (0.150376)
	bfe (0.149858)
	lin (0.145603)
	ssp (0.13552)
	ste (0.135208)
	pla (0.133672)
	lyg (0.133103)
	ret (0.128733)