Non-Coding RNA Search

Ss1.1-rvin01_i24.5

Sequence:


               
               TTTTTTTTTTCCCATGGCTGCACCCACAACATATGGAATTTCCCAGGCCAGGGATTGAAT
CCAAACAAGAGCAGCGACCTATGCCTTCACAGCAACCCAAGCCACTGCAGTTGGATTCTT
AACCCAGTGTGCCACAGTGGGAACTCCTACGTTAACTTTTTTAGAATGACATAGGTAAAC
ACTAAATGATCATGTCAAGATTCCAAAACTGACATATTCATTTGATGTAATAAGCAGGAA
TTTTAGATGCAGATGAATGAGGATAAGAATAAGTCATTTTCCACTGACCTTCCTTTCTGA
ATAAGGGAAAGGAAAAGAACACTAGCTAAGAAGGGAAGGGGAAGTGATGTCATAAAAAAA
ACAGACTCTATATTTTGTTTTATTTTGCTGTATAGAAAATTTTTTACTTGGAAACAAGTA
GAAAAATGGTGTTTGAGGAATTTTATTTAATTTTTTAATAAACTGTGGTACAAATTGTTC
ATATTACTAAATATTTCCCTGGAATGTAATTCAAAGTTTGTGGTACACAATCAGAGACCT
TATATAAGACAGTAATAAGTTCATATCTTGGTGTGTGGCCCTATTTGTAGAATGCTAAAC
CCAATTTGCAAGTTGTATGCAATTTTGCAAAGAAGGAAAAATAATTTGTACTTTTTATTC
AATTCTGTATAGATTATAAAATTATTTTTATTAAATAAATATTTTACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTCCCATGGCTGCACCCACAACATATGGAATTTCCCAGGCCAGGGATTGAAT
CCAAACAAGAGCAGCGACCTATGCCTTCACAGCAACCCAAGCCACTGCAGTTGGATTCTT
AACCCAGTGTGCCACAGTGGGAACTCCTACGTTAACTTTTTTAGAATGACATAGGTAAAC
ACTAAATGATCATGTCAAGATTCCAAAACTGACATATTCATTTGATGTAATAAGCAGGAA
TTTTAGATGCAGATGAATGAGGATAAGAATAAGTCATTTTCCACTGACCTTCCTTTCTGA
ATAAGGGAAAGGAAAAGAACACTAGCTAAGAAGGGAAGGGGAAGTGATGTCATAAAAAAA
ACAGACTCTATATTTTGTTTTATTTTGCTGTATAGAAAATTTTTTACTTGGAAACAAGTA
GAAAAATGGTGTTTGAGGAATTTTATTTAATTTTTTAATAAACTGTGGTACAAATTGTTC
ATATTACTAAATATTTCCCTGGAATGTAATTCAAAGTTTGTGGTACACAATCAGAGACCT
TATATAAGACAGTAATAAGTTCATATCTTGGTGTGTGGCCCTATTTGTAGAATGCTAAAC
CCAATTTGCAAGTTGTATGCAATTTTGCAAAGAAGGAAAAATAATTTGTACTTTTTATTC
AATTCTGTATAGATTATAAAATTATTTTTATTAAATAAATATTTTACA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               241-350, + strand, RNAz p=0.531401

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               241-350, + strand, RNAz p=0.531401

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC018514, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC018514, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               147-708, gnl|bosTau2|chr16 (24867268-24866681)
               

               
               147-708, gnl|Hg17|chr1 (166165444-166164830)
               

               
               147-708, gnl|Mm7|chr1 (164231757-164232392)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               147-708, gnl|bosTau2|chr16 (24867268-24866681)
               

               
               147-708, gnl|Hg17|chr1 (166165444-166164830)
               

               
               147-708, gnl|Mm7|chr1 (164231757-164232392)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               vin (0.997672)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               mgm (0.180343)
               

               
               eye (0.170503)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               ret (0.128733)
               

               
               spc (0.113366)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.997672)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               mgm (0.180343)
               

               
               eye (0.170503)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               ret (0.128733)
               

               
               spc (0.113366)

	147-708, gnl\|bosTau2\|chr16 (24867268-24866681)
	147-708, gnl\|Hg17\|chr1 (166165444-166164830)
	147-708, gnl\|Mm7\|chr1 (164231757-164232392)

	vin (0.997672)
	mgp (0.230681)
	hea (0.204499)
	mgm (0.180343)
	eye (0.170503)
	lun (0.150489)
	bfe (0.149858)
	ski (0.146735)
	ret (0.128733)
	spc (0.113366)