Non-Coding RNA Search

Ss1.1-rvin01_o18.5

Sequence:


               
               CAAGTTAGATCAGAAAACCCAAGGCTACTATCCCGTGAAATCTCCAGCATGGAAAAACTG
CACCATCCCAACATCATCCGCCTTTATGAAGTCGTGGAGACCCTATCCAAGCTCCACTTG
GTGATGGAGTATGCAGGGGGTGGGGAGCTCTTTGGGAAGATCAGCACCGAGGGGAAGTTC
TCAGAATCAGAAAGCAAGCTCATCTTCTCCCAGATTGTGTCTGCCGTGAAGCACATGCAT
GAAAACCAAATTATTCACAGAGATCTGAAAGCAGAAAATGTGTTCTATACCAGTAATACT
TGTGTGAAGGTGGGCGATTTTGGATTCAGCACAGTCAGTAAAAAAGGTGAAATGCTGAAC
ACTTTCTGTGGGTCTCCTCCCTACGCTGCCCCCGAACTTTTTCGAGATGAGCACTACGTC
GGCATTTATGTGGATATCTGGGCCTTGGGGGTGCTTCTGTACTTCATGGTGACGGGCACC
ATGCCATTTCGGGCAGAGACGGTGGCCAAGCTGAAGAAGAGCATCCTGGAGGGCACGTAC
AGTGTGCCTCCACACGTGTCAGAGCCCTGCCTCCGCCTCATCCGGGGGGTCCTCCAACCC
GTACCCACAGAGAGGTACGGGATCGACTCCATCATGAATAATGAATGGATGCAAGGGGTG
CCGTACCCCCACCCATTGGAGCCCTTCCAACTGGATCCCAAACACTTGTCAGAAACCAGC
ACCCTCAAAGAAGAAGAAAATGAGGTCAAAAGCACTTTAGAACATTTGGGCATCACAGAG
GAACATATTCGAAATAACCAAGGGAGAGATGCCCGAAGCTCCATCACAGGCGTCTATCGA
ATCATTTTGCATAGAGTGCAAAAGAAAAAGGCTTTGGAAAGTGTCCCAATAATGATACTA
CCAGACCCTAAAGAAAGGGACCTAAAGAAAGGGTCCCGGGTCTACAGAGGCATAAGACAC
ACATCCAAATTTTGTTCAATTTTATAAATTGCATTAGACTGCTGGTAATTAACCAAGATC
TTTGTTGCTGCTTTTAAATTTTTTCACCAATTTGAGCAGAGACATTTTTGTAATTTTTAA
ATAAATTTAAATTTAAGATAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGTTAGATCAGAAAACCCAAGGCTACTATCCCGTGAAATCTCCAGCATGGAAAAACTG
CACCATCCCAACATCATCCGCCTTTATGAAGTCGTGGAGACCCTATCCAAGCTCCACTTG
GTGATGGAGTATGCAGGGGGTGGGGAGCTCTTTGGGAAGATCAGCACCGAGGGGAAGTTC
TCAGAATCAGAAAGCAAGCTCATCTTCTCCCAGATTGTGTCTGCCGTGAAGCACATGCAT
GAAAACCAAATTATTCACAGAGATCTGAAAGCAGAAAATGTGTTCTATACCAGTAATACT
TGTGTGAAGGTGGGCGATTTTGGATTCAGCACAGTCAGTAAAAAAGGTGAAATGCTGAAC
ACTTTCTGTGGGTCTCCTCCCTACGCTGCCCCCGAACTTTTTCGAGATGAGCACTACGTC
GGCATTTATGTGGATATCTGGGCCTTGGGGGTGCTTCTGTACTTCATGGTGACGGGCACC
ATGCCATTTCGGGCAGAGACGGTGGCCAAGCTGAAGAAGAGCATCCTGGAGGGCACGTAC
AGTGTGCCTCCACACGTGTCAGAGCCCTGCCTCCGCCTCATCCGGGGGGTCCTCCAACCC
GTACCCACAGAGAGGTACGGGATCGACTCCATCATGAATAATGAATGGATGCAAGGGGTG
CCGTACCCCCACCCATTGGAGCCCTTCCAACTGGATCCCAAACACTTGTCAGAAACCAGC
ACCCTCAAAGAAGAAGAAAATGAGGTCAAAAGCACTTTAGAACATTTGGGCATCACAGAG
GAACATATTCGAAATAACCAAGGGAGAGATGCCCGAAGCTCCATCACAGGCGTCTATCGA
ATCATTTTGCATAGAGTGCAAAAGAAAAAGGCTTTGGAAAGTGTCCCAATAATGATACTA
CCAGACCCTAAAGAAAGGGACCTAAAGAAAGGGTCCCGGGTCTACAGAGGCATAAGACAC
ACATCCAAATTTTGTTCAATTTTATAAATTGCATTAGACTGCTGGTAATTAACCAAGATC
TTTGTTGCTGCTTTTAAATTTTTTCACCAATTTGAGCAGAGACATTTTTGTAATTTTTAA
ATAAATTTAAATTTAAGATAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61874788|ref|XP_608675.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61874788|ref|XP_608675.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               431-550, - strand, RNAz p=0.563691
               

               
               591-710, - strand, RNAz p=0.620235
               

               
               831-990, - strand, RNAz p=0.867838

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               431-550, - strand, RNAz p=0.563691
               

               
               591-710, - strand, RNAz p=0.620235
               

               
               831-990, - strand, RNAz p=0.867838

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               232-1100, gnl|bosTau2|chr20 (18820682-18819815)
               

               
               232-1100, gnl|Hg17|chr5 (43315834-43316705)
               

               
               232-1100, gnl|Mm7|chr13_random (475049-475912)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               232-1100, gnl|bosTau2|chr20 (18820682-18819815)
               

               
               232-1100, gnl|Hg17|chr5 (43315834-43316705)
               

               
               232-1100, gnl|Mm7|chr13_random (475049-475912)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               vin (0.332557)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)

	431-550, - strand, RNAz p=0.563691
	591-710, - strand, RNAz p=0.620235
	831-990, - strand, RNAz p=0.867838

	232-1100, gnl\|bosTau2\|chr20 (18820682-18819815)
	232-1100, gnl\|Hg17\|chr5 (43315834-43316705)
	232-1100, gnl\|Mm7\|chr13_random (475049-475912)