Non-Coding RNA Search

Ss1.1-rvin025_h17.5

Sequence:


               
               GTGAATCCACCACAAGCAACTGGTTCAAACAGTGACGTGCTGCCGTTCTTCCTTCTGTGG
TGAAAGCAAATGTGGTTTTGTCAGTTGTCACTCACCTGTCATTTGAGGCTTTTTAATAAG
ATAGAGGCTGCTGGTGTTGGTACCTGTGGATTTTTCAATAGTGATGTGTTAGTTCTGCCA
ATATAATTAATCTTACATTGGCCCTTGGGGGAGAAAAACAACTGAGTCCCTACATTTCAG
GGCTAGGGTGTCTCTACTGAGGATTGCGAGCAAGCCCAGCCGCATCCTTCCCTCGCACAG
AGGGACCCGGGTTTGGACTCGAAGAGATTTAGCCTTTCACCTGGGTTCTGGGTATATTTG
CACTTTTTTGAGACCTGTAGCTAACCATCTTGTGAGTGCCAGTGTGTATTTCAGGAAAAA
TTAAGTTGAAACAAAGGCCCTTAAAATCTCAGAAAGCAAAGTTCCCTTTAGTCAAAAAGC
TGAAGGAGTATTGACAAAACGGTTACGTATGTTCAGTTTTACTGTCAGATGTCATCACTG
TTCCAAGAGGTAAGCAAGCACATTTAGAATTTTGTTTTCAACAGTTAACTAATTAAAATG
TTACTTCCACAAAATATGTGAATTTGCTGCTTCTGAGAGGCAATGTGAAAGAGGAAGTAT
TACTTTTATGTACAAAGTTATTTATTTATAGAAATTTTGGTACAATGTACATTGAAAAAC
ATGTAAAATATTGAAGTGTCTAACAAGTGGCATTGAAGTGTCTTTAATAAATAAAGGTTC
ATTTATAAAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGAATCCACCACAAGCAACTGGTTCAAACAGTGACGTGCTGCCGTTCTTCCTTCTGTGG
TGAAAGCAAATGTGGTTTTGTCAGTTGTCACTCACCTGTCATTTGAGGCTTTTTAATAAG
ATAGAGGCTGCTGGTGTTGGTACCTGTGGATTTTTCAATAGTGATGTGTTAGTTCTGCCA
ATATAATTAATCTTACATTGGCCCTTGGGGGAGAAAAACAACTGAGTCCCTACATTTCAG
GGCTAGGGTGTCTCTACTGAGGATTGCGAGCAAGCCCAGCCGCATCCTTCCCTCGCACAG
AGGGACCCGGGTTTGGACTCGAAGAGATTTAGCCTTTCACCTGGGTTCTGGGTATATTTG
CACTTTTTTGAGACCTGTAGCTAACCATCTTGTGAGTGCCAGTGTGTATTTCAGGAAAAA
TTAAGTTGAAACAAAGGCCCTTAAAATCTCAGAAAGCAAAGTTCCCTTTAGTCAAAAAGC
TGAAGGAGTATTGACAAAACGGTTACGTATGTTCAGTTTTACTGTCAGATGTCATCACTG
TTCCAAGAGGTAAGCAAGCACATTTAGAATTTTGTTTTCAACAGTTAACTAATTAAAATG
TTACTTCCACAAAATATGTGAATTTGCTGCTTCTGAGAGGCAATGTGAAAGAGGAAGTAT
TACTTTTATGTACAAAGTTATTTATTTATAGAAATTTTGGTACAATGTACATTGAAAAAC
ATGTAAAATATTGAAGTGTCTAACAAGTGGCATTGAAGTGTCTTTAATAAATAAAGGTTC
ATTTATAAAATG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               145-264, - strand, RNAz p=0.99519
               

               
               599-717, + strand, RNAz p=0.628206

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               145-264, - strand, RNAz p=0.99519
               

               
               599-717, + strand, RNAz p=0.628206

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AY730707, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AY730707, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-792, gnl|bosTau2|chr22 (25890361-25891141)
               

               
               1-792, gnl|Hg17|chr3 (66512674-66511914)
               

               
               1-792, gnl|Mm7|chr6 (94693316-94692634)
               


               
               331-771, gnl|bosTau2|chr16 (9230139-9229708)
               

               
               331-771, gnl|Hg17|chr3 (66512339-66511930)
               

               
               331-771, gnl|Mm7|chr6 (94693061-94692650)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-792, gnl|bosTau2|chr22 (25890361-25891141)
               

               
               1-792, gnl|Hg17|chr3 (66512674-66511914)
               

               
               1-792, gnl|Mm7|chr6 (94693316-94692634)
               


               
               331-771, gnl|bosTau2|chr16 (9230139-9229708)
               

               
               331-771, gnl|Hg17|chr3 (66512339-66511930)
               

               
               331-771, gnl|Mm7|chr6 (94693061-94692650)

Expressed library(ies): 20 entry(ies)

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Expressed library(ies): 20 entry(ies)

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               hea (0.408998)
               

               
               sag (0.36543)
               

               
               gul (0.355177)
               

               
               vin (0.332557)
               

               
               mga (0.32041)
               

               
               cst (0.280073)
               

               
               che (0.272628)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               eli (0.151814)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               thg (0.126791)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.408998)
               

               
               sag (0.36543)
               

               
               gul (0.355177)
               

               
               vin (0.332557)
               

               
               mga (0.32041)
               

               
               cst (0.280073)
               

               
               che (0.272628)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               eli (0.151814)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               thg (0.126791)

	145-264, - strand, RNAz p=0.99519
	599-717, + strand, RNAz p=0.628206

	1-792, gnl\|bosTau2\|chr22 (25890361-25891141)
	1-792, gnl\|Hg17\|chr3 (66512674-66511914)
	1-792, gnl\|Mm7\|chr6 (94693316-94692634)

	331-771, gnl\|bosTau2\|chr16 (9230139-9229708)
	331-771, gnl\|Hg17\|chr3 (66512339-66511930)
	331-771, gnl\|Mm7\|chr6 (94693061-94692650)

	hea (0.408998)
	sag (0.36543)
	gul (0.355177)
	vin (0.332557)
	mga (0.32041)
	cst (0.280073)
	che (0.272628)
	aor (0.195274)
	cmu (0.186393)
	sto (0.179824)
	sin (0.174948)
	rec (0.17307)
	eli (0.151814)
	fat (0.147427)
	ski (0.146735)
	spl (0.143184)
	csk (0.140746)
	ova (0.129132)
	ret (0.128733)
	thg (0.126791)