Non-Coding RNA Search

Ss1.1-rvin025_h9.5

Sequence:


               
               AGGGGGACAAGCAGGCTCTGCGCACAGACGGACCCCTGGAAGATTCTCACGAGATACGGC
AAGCCCTTCAGAGCCTCCAGAAATTTGTTCCGGCGAATTACGCCAGCTACACCCAGGAGT
ACTATCGGTTCGCAGGCAAGAAGATTGTCATTCAAGAATCCATAGAGAGTTACGGAGCGG
TGGTGTGGCCAGCGGCTATGGCTTTGTGCCAGTATTTGGAGGAACATGCGGAGGAACTGA
ATTTCCAAGATGCCAAGATACTTGAAATTGGTGCGGGACCAGGCCTGGTTTCCATCGTGG
CCAGTATTCTAGGAGCTCAAGTCACAGCAACAGACTTGCCCGACGTCCTAGGGAACCTTC
AATTCAATCTTTTAAGGAACACACTACACCGTGCAGCCCATCTGCCTGAGGTCAAAGAGC
TGGCGTGGGGAGAGGGCCTGGAAGACAACTTCCCCAAGGCCTCGCTTTCTTACGACTACG
TGCTGGCTTCCGACGTGGTCTACCACCACTACTTCCTGGACAAGCTGCTCACCACCATGG
CCTACCTCTGTCAGCCGGGCACCGTGCTGCTCTGGGCAAACAAGTTCAGATTCAGCACCG
ATTATGAATTTTTGGAAAAATTCAAGCAAGTTTTTGATACAACGCTCTTGGCAGAATTTC
CAGAGTCATCTGTCAAGGTTTTCAAAGGAGTGCTGAAATGGGACTAAGTTAAACCAAATG
CCTTTCACAACAGGAGTGTGTCTTTTGAGCAGCGTTAGAAATGGCAGTTCAAAGACTTCT
AATATAAGACTGCAAAGGTAGGGCATAAAAACAACCTGTATGCCTAACAGACATGCTATT
GCAGCAACTCTCTAACCTGCTTAGGATTACCTGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGGGACAAGCAGGCTCTGCGCACAGACGGACCCCTGGAAGATTCTCACGAGATACGGC
AAGCCCTTCAGAGCCTCCAGAAATTTGTTCCGGCGAATTACGCCAGCTACACCCAGGAGT
ACTATCGGTTCGCAGGCAAGAAGATTGTCATTCAAGAATCCATAGAGAGTTACGGAGCGG
TGGTGTGGCCAGCGGCTATGGCTTTGTGCCAGTATTTGGAGGAACATGCGGAGGAACTGA
ATTTCCAAGATGCCAAGATACTTGAAATTGGTGCGGGACCAGGCCTGGTTTCCATCGTGG
CCAGTATTCTAGGAGCTCAAGTCACAGCAACAGACTTGCCCGACGTCCTAGGGAACCTTC
AATTCAATCTTTTAAGGAACACACTACACCGTGCAGCCCATCTGCCTGAGGTCAAAGAGC
TGGCGTGGGGAGAGGGCCTGGAAGACAACTTCCCCAAGGCCTCGCTTTCTTACGACTACG
TGCTGGCTTCCGACGTGGTCTACCACCACTACTTCCTGGACAAGCTGCTCACCACCATGG
CCTACCTCTGTCAGCCGGGCACCGTGCTGCTCTGGGCAAACAAGTTCAGATTCAGCACCG
ATTATGAATTTTTGGAAAAATTCAAGCAAGTTTTTGATACAACGCTCTTGGCAGAATTTC
CAGAGTCATCTGTCAAGGTTTTCAAAGGAGTGCTGAAATGGGACTAAGTTAAACCAAATG
CCTTTCACAACAGGAGTGTGTCTTTTGAGCAGCGTTAGAAATGGCAGTTCAAAGACTTCT
AATATAAGACTGCAAAGGTAGGGCATAAAAACAACCTGTATGCCTAACAGACATGCTATT
GCAGCAACTCTCTAACCTGCTTAGGATTACCTGCTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|58293779|ref|NP_001010977.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|58293779|ref|NP_001010977.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               509-668, + strand, RNAz p=0.790489

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               509-668, + strand, RNAz p=0.790489

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               41-195, gnl|bosTau2|chr12 (41107956-41108110)
               

               
               41-195, gnl|Hg17|chr13 (102141317-102141163)
               

               
               41-195, gnl|Mm7|chr1 (44254162-44254008)
               


               
               310-762, gnl|bosTau2|chr12 (41112054-41112506)
               

               
               310-762, gnl|Hg17|chr13 (102136779-102136305)
               

               
               310-762, gnl|Mm7|chr1 (44250423-44249976)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               41-195, gnl|bosTau2|chr12 (41107956-41108110)
               

               
               41-195, gnl|Hg17|chr13 (102141317-102141163)
               

               
               41-195, gnl|Mm7|chr1 (44254162-44254008)
               


               
               310-762, gnl|bosTau2|chr12 (41112054-41112506)
               

               
               310-762, gnl|Hg17|chr13 (102136779-102136305)
               

               
               310-762, gnl|Mm7|chr1 (44250423-44249976)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               vin (0.665115)
               

               
               ssp (0.542079)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.665115)
               

               
               ssp (0.542079)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

	41-195, gnl\|bosTau2\|chr12 (41107956-41108110)
	41-195, gnl\|Hg17\|chr13 (102141317-102141163)
	41-195, gnl\|Mm7\|chr1 (44254162-44254008)

	310-762, gnl\|bosTau2\|chr12 (41112054-41112506)
	310-762, gnl\|Hg17\|chr13 (102136779-102136305)
	310-762, gnl\|Mm7\|chr1 (44250423-44249976)