Non-Coding RNA Search

Ss1.1-rvin025_i24.5

Sequence:


               
               TGAAAAGTTGCCTTGTGTCTTTTTGGTGGAAAATACTGGAGATTGTGATGGATCGTGTTT
CAAAATTCAGGCGGCCAGGCTTTGGACCATCTGAGAAATCAACACATCTAAAAAAATTTA
ACAAATAAAGAACGGTAAATAGATCCTAGCAGGAAGGACTATAACAACAGCTTTATTTTT
TTGACAGTCACATCTTCTCTACCTGTTTAAATCCTGGGCTGTAGAATTGCCATCCATTAG
GCTCTCTGTAAAGAGGAGATATTCTGCTCCTTCATGGCCAGTCTTCCCTAACCTTATAAT
TTCAGCTTTGCAACAGATTTCACCTCTTGGCATGAGGATTCCAAGAACTTTTACAGTTAT
TCATGAGTGGGTCTTGAGATGTCATTTTCATCTTGGATAGTTTGACTTCTATACCTCTAG
TTCAGTGTATCATACTGATGGATTGTTATTTTTCACAAGGTGCTGCATTCTAAGAATAGA
TGGACCAAATTTTCAGAAACTGTTTTCTTGCCTTGTATATCTTTTTATTCTCTTACGTAT
TCTATTTGTGTTTTATTATATGCACATTTTGGAGTATTTAAAAATAACTGCTGGTTCTTC
TAATGTATTTGTCCACCTTATATTCTTATATCCTGGCCAGTATTCTCTGATTTGTAGCTA
TGACTTTCTTGGGACATTGCTTACCTGATGTGACATATATTTATCCATTTGCGTAGCATA
GTTCTGGAGTTTCCTGTTTGCAGAGCTCCTTGCTGCATTGGCAGTTACATATAAGGTAAA
GTTAGTCTCTCATCCAATTAAATACCTGCCTCTGATTGATTTTTTTTTTCCCCTTCCAGA
TATTCAAAAAACAACAGTCCTCTACTCATTTATATAAACCTAAAATAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAAAGTTGCCTTGTGTCTTTTTGGTGGAAAATACTGGAGATTGTGATGGATCGTGTTT
CAAAATTCAGGCGGCCAGGCTTTGGACCATCTGAGAAATCAACACATCTAAAAAAATTTA
ACAAATAAAGAACGGTAAATAGATCCTAGCAGGAAGGACTATAACAACAGCTTTATTTTT
TTGACAGTCACATCTTCTCTACCTGTTTAAATCCTGGGCTGTAGAATTGCCATCCATTAG
GCTCTCTGTAAAGAGGAGATATTCTGCTCCTTCATGGCCAGTCTTCCCTAACCTTATAAT
TTCAGCTTTGCAACAGATTTCACCTCTTGGCATGAGGATTCCAAGAACTTTTACAGTTAT
TCATGAGTGGGTCTTGAGATGTCATTTTCATCTTGGATAGTTTGACTTCTATACCTCTAG
TTCAGTGTATCATACTGATGGATTGTTATTTTTCACAAGGTGCTGCATTCTAAGAATAGA
TGGACCAAATTTTCAGAAACTGTTTTCTTGCCTTGTATATCTTTTTATTCTCTTACGTAT
TCTATTTGTGTTTTATTATATGCACATTTTGGAGTATTTAAAAATAACTGCTGGTTCTTC
TAATGTATTTGTCCACCTTATATTCTTATATCCTGGCCAGTATTCTCTGATTTGTAGCTA
TGACTTTCTTGGGACATTGCTTACCTGATGTGACATATATTTATCCATTTGCGTAGCATA
GTTCTGGAGTTTCCTGTTTGCAGAGCTCCTTGCTGCATTGGCAGTTACATATAAGGTAAA
GTTAGTCTCTCATCCAATTAAATACCTGCCTCTGATTGATTTTTTTTTTCCCCTTCCAGA
TATTCAAAAAACAACAGTCCTCTACTCATTTATATAAACCTAAAATAG

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               25-887, gnl|bosTau2|chr3 (25867360-25866470)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-887, gnl|bosTau2|chr3 (25867360-25866470)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               vin (0.332557)
               

               
               cbe (0.239234)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               eye (0.170503)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               cbe (0.239234)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               eye (0.170503)

	vin (0.332557)
	cbe (0.239234)
	fcc (0.197785)
	fty (0.17584)
	rec (0.17307)
	eye (0.170503)