Ss1.1-rvin025_l12.5
|
AGGAGCCCAAGTCGGCGAGACGACTGTGCGGCACTGGGACTCGGCCCCGCACCCTTCTTC
CCCTGTTGTTGGGCTGTGTGACTTTTTCCTTCCGTTGGCGCCGAAGGGAACTTGCTGCTG
GGCGGGCGGAGAGGTCAGCCTGCTTCAGGTGGTGGGTTTATGCCGCAGGAGCCCAAGTCG
GCGAGACGACTGTGCGGCACTGGGACTCGGCCCCGCACCCTTCTTCCCCTGTTGTTGGGC
TGTGTGACTTTTTCCTTCCGTTGGCGCCGAAGGGAACTTGCTGCTGGGCGGGCGGAGAGC
TCGAGCCCACCAGGAATGGCAGCCCCATCTATGAAAGAAAGGCAGGCTTGCTGGGGAGCC
CGGGATGCATACTGGAAGTGCTTAGATGAGAACACAGAGGACGCTTCTCAGTGCAAGAAG
TTGAGAAGCTCATTTGAATCAAGTTGTCCCCAGCAGTGGATAAAATATTTTGATAAAAGA
AGGGACTACTTAAAATTCAAAGAAAAATTTGAAGCAGGAGAGTTCCAGCCTTCAAGAACA
ACTGAAAAGTCCTAAGCTATTCCTGAACGTTTCAGAAAGGTTGAATTAATTTTTTTGGAC
ATTGAGAAATGCTCTATGGGACAATAGTAATTTGAATTATGGTAAACACCAGTGCTTGTT
CCATCTATACAGCTCTTAATTAAAGTGATCAAGTAACAAGATTCCATTATTCAAAGTATG
AAGAATTGAAATAAAATGATATGAAATATGCTAAGTATAGTAAAAAATATTTTAAGAGAA
AAATTAAAGCTTATAAAAACAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGGAGCCCAAGTCGGCGAGACGACTGTGCGGCACTGGGACTCGGCCCCGCACCCTTCTTC
CCCTGTTGTTGGGCTGTGTGACTTTTTCCTTCCGTTGGCGCCGAAGGGAACTTGCTGCTG
GGCGGGCGGAGAGGTCAGCCTGCTTCAGGTGGTGGGTTTATGCCGCAGGAGCCCAAGTCG
GCGAGACGACTGTGCGGCACTGGGACTCGGCCCCGCACCCTTCTTCCCCTGTTGTTGGGC
TGTGTGACTTTTTCCTTCCGTTGGCGCCGAAGGGAACTTGCTGCTGGGCGGGCGGAGAGC
TCGAGCCCACCAGGAATGGCAGCCCCATCTATGAAAGAAAGGCAGGCTTGCTGGGGAGCC
CGGGATGCATACTGGAAGTGCTTAGATGAGAACACAGAGGACGCTTCTCAGTGCAAGAAG
TTGAGAAGCTCATTTGAATCAAGTTGTCCCCAGCAGTGGATAAAATATTTTGATAAAAGA
AGGGACTACTTAAAATTCAAAGAAAAATTTGAAGCAGGAGAGTTCCAGCCTTCAAGAACA
ACTGAAAAGTCCTAAGCTATTCCTGAACGTTTCAGAAAGGTTGAATTAATTTTTTTGGAC
ATTGAGAAATGCTCTATGGGACAATAGTAATTTGAATTATGGTAAACACCAGTGCTTGTT
CCATCTATACAGCTCTTAATTAAAGTGATCAAGTAACAAGATTCCATTATTCAAAGTATG
AAGAATTGAAATAAAATGATATGAAATATGCTAAGTATAGTAAAAAATATTTTAAGAGAA
AAATTAAAGCTTATAAAAACAAAA
|
|
gi|56205977|emb|CAI22930.1| |
Protein identifier
|
gi|56205977|emb|CAI22930.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
5-157, gnl|bosTau2|chr28 (3608898-3608748) |
|
5-157, gnl|canFam2|chr4 (8452305-8451963) |
|
5-157, gnl|hg17|chr1 (230815881-230816429) |
|
5-157, gnl|Hg17|chr1 (230816029-230816183) |
|
5-157, gnl|oryCun1|scaffold_202239 (204942-204415) |
|
5-157, gnl|panTro1|chr1 (214692959-214693507) |
|
5-157, gnl|rheMac2|chr1 (222648616-222648068) |
| |
|
298-804, gnl|bosTau2|chr6 (7819037-7819548) |
|
298-804, gnl|Mm7|chr8 (125010287-125012929) |
| |
|
459-802, gnl|bosTau2|chr28 (3600845-3600498) |
|
459-802, gnl|Hg17|chr1 (230826203-230826524) |
|
459-802, gnl|Mm7|chr8 (125012606-125012956) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
5-157, gnl|bosTau2|chr28 (3608898-3608748) |
|
5-157, gnl|canFam2|chr4 (8452305-8451963) |
|
5-157, gnl|hg17|chr1 (230815881-230816429) |
|
5-157, gnl|Hg17|chr1 (230816029-230816183) |
|
5-157, gnl|oryCun1|scaffold_202239 (204942-204415) |
|
5-157, gnl|panTro1|chr1 (214692959-214693507) |
|
5-157, gnl|rheMac2|chr1 (222648616-222648068) |
| |
|
298-804, gnl|bosTau2|chr6 (7819037-7819548) |
|
298-804, gnl|Mm7|chr8 (125010287-125012929) |
| |
|
459-802, gnl|bosTau2|chr28 (3600845-3600498) |
|
459-802, gnl|Hg17|chr1 (230826203-230826524) |
|
459-802, gnl|Mm7|chr8 (125012606-125012956) |
|
cki (0.826173) |
|
vin (0.665115) |
|
cje (0.495704) |
|
mgp (0.461361) |
|
sto (0.359648) |
|
ldo (0.291008) |
|
ret (0.257467) |
|
thg (0.253582) |
|
hea (0.204499) |
|
aor (0.195274) |
|
cmu (0.186393) |
|
sag (0.182715) |
|
mgm (0.180343) |
|
rec (0.17307) |
|
cut (0.169924) |
|
mga (0.160205) |
|
fco (0.157208) |
|
csk (0.140746) |
|
che (0.136314) |
|
kid (0.129735) |
|
cki (0.826173) |
|
vin (0.665115) |
|
cje (0.495704) |
|
mgp (0.461361) |
|
sto (0.359648) |
|
ldo (0.291008) |
|
ret (0.257467) |
|
thg (0.253582) |
|
hea (0.204499) |
|
aor (0.195274) |
|
cmu (0.186393) |
|
sag (0.182715) |
|
mgm (0.180343) |
|
rec (0.17307) |
|
cut (0.169924) |
|
mga (0.160205) |
|
fco (0.157208) |
|
csk (0.140746) |
|
che (0.136314) |
|
kid (0.129735) |
