Non-Coding RNA Search

Ss1.1-rvin027_a4.5

Sequence:


               
               TGAGGATCTGGTTGTTGTCACTGCTCTGGCATGGGTTCAATCCCTGGCCTGGGAACTTCC
ACATGCTACAGGCGTGGCCAAAAAAAAAAATAGTAATAACTCTAGTACATTTCAGTTTTG
CTGATTGGTTAGAGTCTCTTGGTGTCACTGACCCTGGTTTTACTCATTTAAGGCAGCATT
TCAAATGTAATGTTTTCTCTCAGTTCAATACCAAAAGAACAAATCTGCACTGCACCAAAA
TGAAGTTCATTGTCAAAGTTAGTGTATGGTATTGTCAAATGCATTAATATATGTACTTAA
TATATATGTTTATTTTTAAATTAGGTTGAAATTTACTTCCTTTCTTAAAAGTTATAGCAA
AATACTTAAAATTATAATGTGCAAATAGATGGTATAGCATGAAATAGATGTTAAGTTTTT
AAAACAATGTCTTTAGGGTTTCAGCTTTTCCTGTCTTTTAGAACAAATTAGCCATTTTTT
ATCCTAAGGAAGGGTTGCATTATAAAGCTGATCTACAACTAACCTATCAGAGGAAACACA
TAGGACTTGTATCTAGTTCTCTAATGTAGCCAAAAGTGCCATTTGTAAAACTACTTGATG
ATGGATGTTTTCTGAAGCTCTTTTGCCTGGAAAAAAAAAAAGTACATTAAAAAGCTTTTT
CTGTACAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGGATCTGGTTGTTGTCACTGCTCTGGCATGGGTTCAATCCCTGGCCTGGGAACTTCC
ACATGCTACAGGCGTGGCCAAAAAAAAAAATAGTAATAACTCTAGTACATTTCAGTTTTG
CTGATTGGTTAGAGTCTCTTGGTGTCACTGACCCTGGTTTTACTCATTTAAGGCAGCATT
TCAAATGTAATGTTTTCTCTCAGTTCAATACCAAAAGAACAAATCTGCACTGCACCAAAA
TGAAGTTCATTGTCAAAGTTAGTGTATGGTATTGTCAAATGCATTAATATATGTACTTAA
TATATATGTTTATTTTTAAATTAGGTTGAAATTTACTTCCTTTCTTAAAAGTTATAGCAA
AATACTTAAAATTATAATGTGCAAATAGATGGTATAGCATGAAATAGATGTTAAGTTTTT
AAAACAATGTCTTTAGGGTTTCAGCTTTTCCTGTCTTTTAGAACAAATTAGCCATTTTTT
ATCCTAAGGAAGGGTTGCATTATAAAGCTGATCTACAACTAACCTATCAGAGGAAACACA
TAGGACTTGTATCTAGTTCTCTAATGTAGCCAAAAGTGCCATTTGTAAAACTACTTGATG
ATGGATGTTTTCTGAAGCTCTTTTGCCTGGAAAAAAAAAAAGTACATTAAAAAGCTTTTT
CTGTACAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               109-666, gnl|bosTau2|chr14 (50162505-50163064)
               

               
               109-666, gnl|Hg17|chr8 (121136746-121137627)
               

               
               109-666, gnl|Mm7|chr15 (55319076-55319786)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               109-666, gnl|bosTau2|chr14 (50162505-50163064)
               

               
               109-666, gnl|Hg17|chr8 (121136746-121137627)
               

               
               109-666, gnl|Mm7|chr15 (55319076-55319786)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               bfe (0.599431)
               

               
               vin (0.332557)
               

               
               aor (0.195274)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.599431)
               

               
               vin (0.332557)
               

               
               aor (0.195274)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

	109-666, gnl\|bosTau2\|chr14 (50162505-50163064)
	109-666, gnl\|Hg17\|chr8 (121136746-121137627)
	109-666, gnl\|Mm7\|chr15 (55319076-55319786)

	bfe (0.599431)
	vin (0.332557)
	aor (0.195274)
	rec (0.17307)
	fhi (0.169578)
	kid (0.129735)
	sug (0.127291)
	tra (0.123092)
	jca (0.11396)
	ldo (0.0970026)