Ss1.1-rvin02_l7.5
|
ACAGAACTTATTTTTTTAGAGATAGTGATGGAACTCAAACTGACAGTGTCATTTATGTAC
ATTTCAAAAGCTTTGTCAGTGAAACAGTCTTTTTTTGCAGAAGCTTCCTTTCCTAGTCAG
GGTAATGCTTAAAATTCCAGAGGTGATTATGTTTCAGACCAAGCTGGTTCGCATTTCCAT
CAGATCTCTCCATCTTCCACCAGAGAAGCAGGCAGCAACAACAATGGGGCAGAGCCAACA
GACACGAGCAGGAGTTTCACTGACTCCAACACCACTGATCCTTCTTTTAGAGAAGAAAAA
AATAAATAAATAAAACAGGTAAAAATAGCTTTTGTAGTTAAGACTATCAGTAATCCATTG
CTGCTTTTGTGTTTGTGTGCATGTGTATGTCAGTGAACCAACAATAATGCCTTGCCCAAG
CCGTGCGTTCAGCCATCTCAAGTGCAATTCGTGATGGAGACTTTGGTTTCCAATAGATAA
AGTTTTACATAATTAAACCTGTAAAAATTAATTTTTTCCAATAGTAAACCTATTGCTATC
AATTATTTCAGCAATTGGTATACTATTAAAATGACCAGGCCACATGAGTTTCTGTAGATG
TTTTAGTAATTTGAGCCAAATCCTCATACTGTTTTCTCATAAAATAATAGGAGTGAGAAT
TTGGTCCACAGTTTGCTCTAAGTTCAAAAAAGAACTTTCCCTTACAGTTAAAAGGCTTTT
TCGTTTGTTTTGGGGCTTGGGGGCTTTTTATTTTTTTTCCTCAAATCTCTTACATATTTT
CTTTTGCCTGCACCCGGTTACTTCTTTGAGCGTTTCCATCTATTTTGATATATGGGTAAT
AGATAGTGCACAGTATCATCAAAGCGTTAGAAATTTTGTTCACTTAATATAATTAAGTAT
AATTCATACATATATATCTTAATTCCTTTCTTTCCTCACACAACTATTTTATAAGTAACT
GGAATTTTGCATTAGATCTTATACAGAGCAGTATTTTATTAAAATTCAAAAGGGAAGACT
TTTATGTGTTCATTTTATAGTTTTTGTTTTTTAAATATCTTTACATTGTCTGCAATTAAA
GTGTTTTCAACTTGCATTGGAATGGACTCTGAATGTATTTTTGTGTTAAGCTGTATATTT
TTTAGATTTTTAGCATGAAGTTAGCCGCAAAACATTGTACAAAAGAATTTTAAAATTTAA
GAGTCACTAAAAGGGTTTAAACATCTATACATGTTAAATGCTATATGGATTTTAATTAAA
CATTTGAGAATG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ACAGAACTTATTTTTTTAGAGATAGTGATGGAACTCAAACTGACAGTGTCATTTATGTAC
ATTTCAAAAGCTTTGTCAGTGAAACAGTCTTTTTTTGCAGAAGCTTCCTTTCCTAGTCAG
GGTAATGCTTAAAATTCCAGAGGTGATTATGTTTCAGACCAAGCTGGTTCGCATTTCCAT
CAGATCTCTCCATCTTCCACCAGAGAAGCAGGCAGCAACAACAATGGGGCAGAGCCAACA
GACACGAGCAGGAGTTTCACTGACTCCAACACCACTGATCCTTCTTTTAGAGAAGAAAAA
AATAAATAAATAAAACAGGTAAAAATAGCTTTTGTAGTTAAGACTATCAGTAATCCATTG
CTGCTTTTGTGTTTGTGTGCATGTGTATGTCAGTGAACCAACAATAATGCCTTGCCCAAG
CCGTGCGTTCAGCCATCTCAAGTGCAATTCGTGATGGAGACTTTGGTTTCCAATAGATAA
AGTTTTACATAATTAAACCTGTAAAAATTAATTTTTTCCAATAGTAAACCTATTGCTATC
AATTATTTCAGCAATTGGTATACTATTAAAATGACCAGGCCACATGAGTTTCTGTAGATG
TTTTAGTAATTTGAGCCAAATCCTCATACTGTTTTCTCATAAAATAATAGGAGTGAGAAT
TTGGTCCACAGTTTGCTCTAAGTTCAAAAAAGAACTTTCCCTTACAGTTAAAAGGCTTTT
TCGTTTGTTTTGGGGCTTGGGGGCTTTTTATTTTTTTTCCTCAAATCTCTTACATATTTT
CTTTTGCCTGCACCCGGTTACTTCTTTGAGCGTTTCCATCTATTTTGATATATGGGTAAT
AGATAGTGCACAGTATCATCAAAGCGTTAGAAATTTTGTTCACTTAATATAATTAAGTAT
AATTCATACATATATATCTTAATTCCTTTCTTTCCTCACACAACTATTTTATAAGTAACT
GGAATTTTGCATTAGATCTTATACAGAGCAGTATTTTATTAAAATTCAAAAGGGAAGACT
TTTATGTGTTCATTTTATAGTTTTTGTTTTTTAAATATCTTTACATTGTCTGCAATTAAA
GTGTTTTCAACTTGCATTGGAATGGACTCTGAATGTATTTTTGTGTTAAGCTGTATATTT
TTTAGATTTTTAGCATGAAGTTAGCCGCAAAACATTGTACAAAAGAATTTTAAAATTTAA
GAGTCACTAAAAGGGTTTAAACATCTATACATGTTAAATGCTATATGGATTTTAATTAAA
CATTTGAGAATG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
7-124, gnl|bosTau2|chr1 (79062142-79062257) |
|
7-124, gnl|canFam2|chr23 (41083939-41084225) |
|
7-124, gnl|dasNov1|scaffold_5250 (40235-40069) |
|
7-124, gnl|hg17|chr3 (143509190-143509462) |
|
7-124, gnl|Hg17|chr3 (143509404-143509261) |
|
7-124, gnl|loxAfr1|scaffold_2848 (117035-116759) |
|
7-124, gnl|mm7|chr9 (95702316-95702022) |
|
7-124, gnl|Mm7|chr9 (95702099-95702233) |
|
7-124, gnl|oryCun1|scaffold_185601 (7274-6990) |
|
7-124, gnl|panTro1|chr2 (146082917-146083189) |
|
7-124, gnl|rheMac2|chr2 (145554197-145553927) |
|
7-124, gnl|rn3|chr8 (101147451-101147162) |
| |
|
148-665, gnl|bosTau2|chr1 (79062256-79062750) |
|
148-665, gnl|Hg17|chr3 (143509285-143508736) |
|
148-665, gnl|Mm7|chr9 (95702232-95702711) |
| |
|
717-1272, gnl|bosTau2|chr1 (79062743-79063283) |
|
717-1272, gnl|Hg17|chr3 (143508743-143508156) |
|
717-1272, gnl|Mm7|chr9 (95702706-95703617) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
7-124, gnl|bosTau2|chr1 (79062142-79062257) |
|
7-124, gnl|canFam2|chr23 (41083939-41084225) |
|
7-124, gnl|dasNov1|scaffold_5250 (40235-40069) |
|
7-124, gnl|hg17|chr3 (143509190-143509462) |
|
7-124, gnl|Hg17|chr3 (143509404-143509261) |
|
7-124, gnl|loxAfr1|scaffold_2848 (117035-116759) |
|
7-124, gnl|mm7|chr9 (95702316-95702022) |
|
7-124, gnl|Mm7|chr9 (95702099-95702233) |
|
7-124, gnl|oryCun1|scaffold_185601 (7274-6990) |
|
7-124, gnl|panTro1|chr2 (146082917-146083189) |
|
7-124, gnl|rheMac2|chr2 (145554197-145553927) |
|
7-124, gnl|rn3|chr8 (101147451-101147162) |
| |
|
148-665, gnl|bosTau2|chr1 (79062256-79062750) |
|
148-665, gnl|Hg17|chr3 (143509285-143508736) |
|
148-665, gnl|Mm7|chr9 (95702232-95702711) |
| |
|
717-1272, gnl|bosTau2|chr1 (79062743-79063283) |
|
717-1272, gnl|Hg17|chr3 (143508743-143508156) |
|
717-1272, gnl|Mm7|chr9 (95702706-95703617) |
|
vin (0.332557) |
|
mgp (0.230681) |
|
ecc (0.23007) |
|
sag (0.182715) |
|
lin (0.145603) |
|
lnt (0.142308) |
|
kid (0.129735) |
|
tra (0.123092) |
|
pgl (0.118483) |
|
nbm (0.0993246) |
|
vin (0.332557) |
|
mgp (0.230681) |
|
ecc (0.23007) |
|
sag (0.182715) |
|
lin (0.145603) |
|
lnt (0.142308) |
|
kid (0.129735) |
|
tra (0.123092) |
|
pgl (0.118483) |
|
nbm (0.0993246) |
