Ss1.1-rvin033_i22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCGGGACACCGTTCACGTCAAGGAAGTGACCAAGCACGTCAGTGACACAAACTACAAGA AGAAGTTTGTCAAGGAGAGAGGGAAATCCAACTACTCCATCATGCTGGAGCCCCCAGAGG TGAAGCACGCCATGGAGGTGGCTAAGAAGCAGAGTGACGTCGCTTACAAAAAAGATGCTA AAGAAAACCTGCATTACACCACAGTGGCTGATCGGCCAGACATCAAGAAGGCCACGCAGG CAGCCAAACAGGCCAGCGAGGTGGAGTACAGAGCCAAGCACCGCAAGGAAGGCAGCCATG GGCTGAGCATGCTTGGTCGCCCAGACATTGAAATGGCCAAGAAGGCAGCCACACTGAGCA GCCAGGTTAAATACAGAGAAAATTTCAACAAAGAGAAGGGCAAGACACCAAAATACAATC CAAAAGAGAGCCAGCTCTACAAAATCATGAAAGATGCTAATAATCTCGCAAGTGAGGTTA AGTATAAGGCTGATTTGAAGAAACTTCACAAGCCTGTGACTGACATGAAGGAATCTCTGA TAATGAATCATGTCTTGAATACCAGTCATCTTGCCAGTTCTTACCAGTACAAGAAGAACT ACGAGAAGAGTAAAGGCCACTACCACACAATACCCGATAATCTGGAGCAGCTTCATCTAA AAGAGGCCACAGAACTACAGAGTATAGTAAAATACAAAGAAAAGTATGAAAAGGAACGAG GAAAGCCCATGTTGGACTTTGAAACACCAACATACATCACTGCCAAGGAGTCCCAGCAGA TGCAGAGTGGGAAAGAATATAGGAAAGATTATGAAGAGTCCATTAAAGGCAGAAACCTGA CTGGCCTGGAGGTCACGCCAGCTTTATTACATGTCAAATATGCCACCAAAATAGCCAGCG AGAAAGAGTACAGGAAAGATCTAGAGGAAAGCATCCGTGGGAAGGGTCTCAGTGAAATGG AAGACACACCCGACATGCTAAGAGCGAAGAACGCCACTCAGATCCTCAACGAGAAAGAAT ATAAGAGAGACTTGGAGCTGGAAGTCAAAGGAAGAGGCCTGAATGCCATGGCCAATGAAA CTCCCGACTTCATGAGAGCCAGGAATGCTACAGACATTGCCAGTCAGATTAAGTATAAGC AGTTAGCAGAGATGGAAAAAGCCAATTTCACTTCTGTGGTTGATACACCAGAGATCATTC ATGCCCAACAAGTCAAGAACCTTTCAAGCCAGAAAAAGTACAAGGAAGATGCAGAGAAGT GCATGTCATATTATGAGACCGTTTTGGACACCCCAGAGATGCAGAGAGTCCGGGAGAACC AAAAGAACTTCAGCCTTCTCCAATACCAGTGTGACCTTAAAAACAGTAAAGGAAAAATTA CAGTTGTTCAAGACACGCCAGAAATACTGCGTGTTAAAGAAAATCAAAAGAATTTCAGCT CGGTATTATATAAAGAGGATGTCTCACCAGGAACGGCAATTGGAAAGACACCAGAGATGA TGAGAGTGAAGCAAACCCAGGACCACATTAGCTCGGTTAAGTATAAGGAGACGATTGGAC AAGGAACCCCTATTCCAGACCTGCCTGAAGTAAAGCGTGTCAAGGAGACACAGAAGCACA TCAGCTCGGTTATGTACAAAGAAAACCTGGGGACAGGCATTCCAACCCCAGTCACTCCAG AGATTGAGAGAGTCAAACGCAATCAAGAGAACTTTAGCTCGATTTTGTATTCTGATAGCT TCCGGAAACAAATACAAGGCAAAGCTGCCTATGTCTTGGAGCGGGTCAAGCGCAATCAAG AGAACTTTAGCTCGATTTTGTACAAAGAGAACTTGAGCAAGGGGACTCCCCTCCCTGTCA CTCCTGAGATGGAGCGGGTCAAGCGCAATCAAGAGAACTTTAGCTCGATTTTGTACAAAG AGAACTTGAGCAAGGGGACTCCCCTCCCTGTCACTCCTGAGATGGAGCGGGTCAAGCGCA ATCAAGAGAACTTTAGCTCGATTTTGTACAAAGAGAACTTGAGCAAGGGGACTCCCCTCC CTGTCACTCCTGAGATGGAGCGGGTCAAGCGCAATCAAGAGAACTTTAGCTCGGTGTTGT ATAAAGAAAACCTCGGGAAAGGAATTCCAATTCCCATGACTCCAGAGATGGAGAGAGTCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCGGGACACCGTTCACGTCAAGGAAGTGACCAAGCACGTCAGTGACACAAACTACAAGA AGAAGTTTGTCAAGGAGAGAGGGAAATCCAACTACTCCATCATGCTGGAGCCCCCAGAGG TGAAGCACGCCATGGAGGTGGCTAAGAAGCAGAGTGACGTCGCTTACAAAAAAGATGCTA AAGAAAACCTGCATTACACCACAGTGGCTGATCGGCCAGACATCAAGAAGGCCACGCAGG CAGCCAAACAGGCCAGCGAGGTGGAGTACAGAGCCAAGCACCGCAAGGAAGGCAGCCATG GGCTGAGCATGCTTGGTCGCCCAGACATTGAAATGGCCAAGAAGGCAGCCACACTGAGCA GCCAGGTTAAATACAGAGAAAATTTCAACAAAGAGAAGGGCAAGACACCAAAATACAATC CAAAAGAGAGCCAGCTCTACAAAATCATGAAAGATGCTAATAATCTCGCAAGTGAGGTTA AGTATAAGGCTGATTTGAAGAAACTTCACAAGCCTGTGACTGACATGAAGGAATCTCTGA TAATGAATCATGTCTTGAATACCAGTCATCTTGCCAGTTCTTACCAGTACAAGAAGAACT ACGAGAAGAGTAAAGGCCACTACCACACAATACCCGATAATCTGGAGCAGCTTCATCTAA AAGAGGCCACAGAACTACAGAGTATAGTAAAATACAAAGAAAAGTATGAAAAGGAACGAG GAAAGCCCATGTTGGACTTTGAAACACCAACATACATCACTGCCAAGGAGTCCCAGCAGA TGCAGAGTGGGAAAGAATATAGGAAAGATTATGAAGAGTCCATTAAAGGCAGAAACCTGA CTGGCCTGGAGGTCACGCCAGCTTTATTACATGTCAAATATGCCACCAAAATAGCCAGCG AGAAAGAGTACAGGAAAGATCTAGAGGAAAGCATCCGTGGGAAGGGTCTCAGTGAAATGG AAGACACACCCGACATGCTAAGAGCGAAGAACGCCACTCAGATCCTCAACGAGAAAGAAT ATAAGAGAGACTTGGAGCTGGAAGTCAAAGGAAGAGGCCTGAATGCCATGGCCAATGAAA CTCCCGACTTCATGAGAGCCAGGAATGCTACAGACATTGCCAGTCAGATTAAGTATAAGC AGTTAGCAGAGATGGAAAAAGCCAATTTCACTTCTGTGGTTGATACACCAGAGATCATTC ATGCCCAACAAGTCAAGAACCTTTCAAGCCAGAAAAAGTACAAGGAAGATGCAGAGAAGT GCATGTCATATTATGAGACCGTTTTGGACACCCCAGAGATGCAGAGAGTCCGGGAGAACC AAAAGAACTTCAGCCTTCTCCAATACCAGTGTGACCTTAAAAACAGTAAAGGAAAAATTA CAGTTGTTCAAGACACGCCAGAAATACTGCGTGTTAAAGAAAATCAAAAGAATTTCAGCT CGGTATTATATAAAGAGGATGTCTCACCAGGAACGGCAATTGGAAAGACACCAGAGATGA TGAGAGTGAAGCAAACCCAGGACCACATTAGCTCGGTTAAGTATAAGGAGACGATTGGAC AAGGAACCCCTATTCCAGACCTGCCTGAAGTAAAGCGTGTCAAGGAGACACAGAAGCACA TCAGCTCGGTTATGTACAAAGAAAACCTGGGGACAGGCATTCCAACCCCAGTCACTCCAG AGATTGAGAGAGTCAAACGCAATCAAGAGAACTTTAGCTCGATTTTGTATTCTGATAGCT TCCGGAAACAAATACAAGGCAAAGCTGCCTATGTCTTGGAGCGGGTCAAGCGCAATCAAG AGAACTTTAGCTCGATTTTGTACAAAGAGAACTTGAGCAAGGGGACTCCCCTCCCTGTCA CTCCTGAGATGGAGCGGGTCAAGCGCAATCAAGAGAACTTTAGCTCGATTTTGTACAAAG AGAACTTGAGCAAGGGGACTCCCCTCCCTGTCACTCCTGAGATGGAGCGGGTCAAGCGCA ATCAAGAGAACTTTAGCTCGATTTTGTACAAAGAGAACTTGAGCAAGGGGACTCCCCTCC CTGTCACTCCTGAGATGGAGCGGGTCAAGCGCAATCAAGAGAACTTTAGCTCGGTGTTGT ATAAAGAAAACCTCGGGAAAGGAATTCCAATTCCCATGACTCCAGAGATGGAGAGAGTCA |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1229-1337, - strand, RNAz p=0.542807 | |
| 1338-1446, - strand, RNAz p=0.869612 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1229-1337, - strand, RNAz p=0.542807 | |
| 1338-1446, - strand, RNAz p=0.869612 |
| Aligned organism(s): 76 entry(ies) | More info |
| Aligned organism(s): 76 entry(ies) | Help | Less info |
| 364-478, gnl|bosTau2|chr2 (9251033-9250919) | |
| 364-478, gnl|canFam2|chr19 (55778048-55778197) | |
| 364-478, gnl|danRer3|chr9 (14990582-14990445) | |
| 364-478, gnl|dasNov1|scaffold_185 (34173-34308) | |
| 364-478, gnl|echTel1|scaffold_318019 (140179-140040) | |
| 364-478, gnl|fr1|chrUn (307375116-307374973) | |
| 364-478, gnl|galGal2|chr7 (35859461-35859603) | |
| 364-478, gnl|hg17|chr2 (152201672-152201811) | |
| 364-478, gnl|Hg17|chr2 (152201792-152201678) | |
| 364-478, gnl|loxAfr1|scaffold_390 (168140-168274) | |
| 364-478, gnl|mm7|chr2 (52177742-52177881) | |
| 364-478, gnl|Mm7|chr2 (52177862-52177748) | |
| 364-478, gnl|monDom2|scaffold_2 (42537999-42538139) | |
| 364-478, gnl|oryCun1|scaffold_174976 (7860-7999) | |
| 364-478, gnl|panTro1|chr13 (41264097-41264236) | |
| 364-478, gnl|rheMac2|chr12 (15159103-15159242) | |
| 364-478, gnl|rn3|chr3 (33562170-33562311) | |
| 364-478, gnl|tetNig1|chr2 (17999125-17999246) | |
| 364-478, gnl|xenTro1|scaffold_494 (742274-742406) | |
| 791-902, gnl|bosTau2|chr2 (9246594-9246483) | |
| 791-902, gnl|canFam2|chr19 (55773453-55773597) | |
| 791-902, gnl|danRer3|chr9 (14994732-14994591) | |
| 791-902, gnl|echTel1|scaffold_318019 (143888-143745) | |
| 791-902, gnl|fr1|chrUn (307377051-307376932) | |
| 791-902, gnl|galGal2|chr7 (35855995-35856137) | |
| 791-902, gnl|hg17|chr2 (152196835-152196979) | |
| 791-902, gnl|Hg17|chr2 (152196951-152196840) | |
| 791-902, gnl|loxAfr1|scaffold_390 (164305-164448) | |
| 791-902, gnl|mm7|chr2 (52172473-52172609) | |
| 791-902, gnl|Mm7|chr2 (52172589-52172478) | |
| 791-902, gnl|monDom2|scaffold_2 (42530447-42530591) | |
| 791-902, gnl|oryCun1|scaffold_210392 (57743-57887) | |
| 791-902, gnl|panTro1|chr13 (41259256-41259400) | |
| 791-902, gnl|rheMac2|chr12 (15153934-15154078) | |
| 791-902, gnl|rn3|chr3 (33556888-33557032) | |
| 791-902, gnl|tetNig1|chr2 (17997343-17997462) | |
| 791-902, gnl|xenTro1|scaffold_494 (735101-735245) | |
| 1012-1127, gnl|bosTau2|chr2 (9245416-9245301) | |
| 1012-1127, gnl|canFam2|chr19 (55772045-55772171) | |
| 1012-1127, gnl|danRer3|chr9 (14999578-14999452) | |
| 1012-1127, gnl|echTel1|scaffold_318019 (145524-145398) | |
| 1012-1127, gnl|fr1|chrUn (307378559-307378435) | |
| 1012-1127, gnl|galGal2|chr7 (35854470-35854593) | |
| 1012-1127, gnl|hg17|chr2 (152195596-152195722) | |
| 1012-1127, gnl|Hg17|chr2 (152195717-152195602) | |
| 1012-1127, gnl|loxAfr1|scaffold_313 (156220-156340) | |
| 1012-1127, gnl|mm7|chr2 (52171242-52171368) | |
| 1012-1127, gnl|Mm7|chr2 (52171363-52171248) | |
| 1012-1127, gnl|monDom2|scaffold_2 (42529304-42529430) | |
| 1012-1127, gnl|oryCun1|scaffold_210392 (56649-56775) | |
| 1012-1127, gnl|panTro1|chr13 (41258014-41258140) | |
| 1012-1127, gnl|rheMac2|chr12 (15152695-15152821) | |
| 1012-1127, gnl|rn3|chr3 (33555615-33555741) | |
| 1012-1127, gnl|tetNig1|chr2 (17995974-17996098) | |
| 1012-1127, gnl|xenTro1|scaffold_494 (734258-734376) | |
| 1229-1337, gnl|bosTau2|chr2 (9241039-9240931) | |
| 1229-1337, gnl|canFam2|chr19 (55768135-55768301) | |
| 1229-1337, gnl|danRer3|chr9 (15003137-15003001) | |
| 1229-1337, gnl|echTel1|scaffold_318019 (150619-150455) | |
| 1229-1337, gnl|fr1|chrUn (307378926-307378780) | |
| 1229-1337, gnl|galGal2|chr7 (35853706-35853840) | |
| 1229-1337, gnl|hg17|chr2 (152190015-152190181) | |
| 1229-1337, gnl|Hg17|chr2 (152190135-152190027) | |
| 1229-1337, gnl|loxAfr1|scaffold_313 (147478-147601) | |
| 1229-1337, gnl|mm7|chr2 (52169367-52169533) | |
| 1229-1337, gnl|Mm7|chr2 (52169487-52169379) | |
| 1229-1337, gnl|monDom2|scaffold_2 (42527459-42527621) | |
| 1229-1337, gnl|oryCun1|scaffold_196184 (61718-61824) | |
| 1229-1337, gnl|panTro1|chr13 (41252355-41252521) | |
| 1229-1337, gnl|rheMac2|chr12 (15147025-15147191) | |
| 1229-1337, gnl|rn3|chr3 (33553641-33553807) | |
| 1229-1337, gnl|tetNig1|chr2 (17995613-17995754) | |
| 1229-1337, gnl|xenTro1|scaffold_494 (732554-732720) | |
| 1338-1446, gnl|bosTau2|chr2 (9240416-9240308) | |
| 1338-1446, gnl|Hg17|chr2 (152189035-152188927) | |
| 1338-1446, gnl|Mm7|chr2 (52168786-52168678) |
| Aligned organism(s): 76 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 364-478, gnl|bosTau2|chr2 (9251033-9250919) | |
| 364-478, gnl|canFam2|chr19 (55778048-55778197) | |
| 364-478, gnl|danRer3|chr9 (14990582-14990445) | |
| 364-478, gnl|dasNov1|scaffold_185 (34173-34308) | |
| 364-478, gnl|echTel1|scaffold_318019 (140179-140040) | |
| 364-478, gnl|fr1|chrUn (307375116-307374973) | |
| 364-478, gnl|galGal2|chr7 (35859461-35859603) | |
| 364-478, gnl|hg17|chr2 (152201672-152201811) | |
| 364-478, gnl|Hg17|chr2 (152201792-152201678) | |
| 364-478, gnl|loxAfr1|scaffold_390 (168140-168274) | |
| 364-478, gnl|mm7|chr2 (52177742-52177881) | |
| 364-478, gnl|Mm7|chr2 (52177862-52177748) | |
| 364-478, gnl|monDom2|scaffold_2 (42537999-42538139) | |
| 364-478, gnl|oryCun1|scaffold_174976 (7860-7999) | |
| 364-478, gnl|panTro1|chr13 (41264097-41264236) | |
| 364-478, gnl|rheMac2|chr12 (15159103-15159242) | |
| 364-478, gnl|rn3|chr3 (33562170-33562311) | |
| 364-478, gnl|tetNig1|chr2 (17999125-17999246) | |
| 364-478, gnl|xenTro1|scaffold_494 (742274-742406) | |
| 791-902, gnl|bosTau2|chr2 (9246594-9246483) | |
| 791-902, gnl|canFam2|chr19 (55773453-55773597) | |
| 791-902, gnl|danRer3|chr9 (14994732-14994591) | |
| 791-902, gnl|echTel1|scaffold_318019 (143888-143745) | |
| 791-902, gnl|fr1|chrUn (307377051-307376932) | |
| 791-902, gnl|galGal2|chr7 (35855995-35856137) | |
| 791-902, gnl|hg17|chr2 (152196835-152196979) | |
| 791-902, gnl|Hg17|chr2 (152196951-152196840) | |
| 791-902, gnl|loxAfr1|scaffold_390 (164305-164448) | |
| 791-902, gnl|mm7|chr2 (52172473-52172609) | |
| 791-902, gnl|Mm7|chr2 (52172589-52172478) | |
| 791-902, gnl|monDom2|scaffold_2 (42530447-42530591) | |
| 791-902, gnl|oryCun1|scaffold_210392 (57743-57887) | |
| 791-902, gnl|panTro1|chr13 (41259256-41259400) | |
| 791-902, gnl|rheMac2|chr12 (15153934-15154078) | |
| 791-902, gnl|rn3|chr3 (33556888-33557032) | |
| 791-902, gnl|tetNig1|chr2 (17997343-17997462) | |
| 791-902, gnl|xenTro1|scaffold_494 (735101-735245) | |
| 1012-1127, gnl|bosTau2|chr2 (9245416-9245301) | |
| 1012-1127, gnl|canFam2|chr19 (55772045-55772171) | |
| 1012-1127, gnl|danRer3|chr9 (14999578-14999452) | |
| 1012-1127, gnl|echTel1|scaffold_318019 (145524-145398) | |
| 1012-1127, gnl|fr1|chrUn (307378559-307378435) | |
| 1012-1127, gnl|galGal2|chr7 (35854470-35854593) | |
| 1012-1127, gnl|hg17|chr2 (152195596-152195722) | |
| 1012-1127, gnl|Hg17|chr2 (152195717-152195602) | |
| 1012-1127, gnl|loxAfr1|scaffold_313 (156220-156340) | |
| 1012-1127, gnl|mm7|chr2 (52171242-52171368) | |
| 1012-1127, gnl|Mm7|chr2 (52171363-52171248) | |
| 1012-1127, gnl|monDom2|scaffold_2 (42529304-42529430) | |
| 1012-1127, gnl|oryCun1|scaffold_210392 (56649-56775) | |
| 1012-1127, gnl|panTro1|chr13 (41258014-41258140) | |
| 1012-1127, gnl|rheMac2|chr12 (15152695-15152821) | |
| 1012-1127, gnl|rn3|chr3 (33555615-33555741) | |
| 1012-1127, gnl|tetNig1|chr2 (17995974-17996098) | |
| 1012-1127, gnl|xenTro1|scaffold_494 (734258-734376) | |
| 1229-1337, gnl|bosTau2|chr2 (9241039-9240931) | |
| 1229-1337, gnl|canFam2|chr19 (55768135-55768301) | |
| 1229-1337, gnl|danRer3|chr9 (15003137-15003001) | |
| 1229-1337, gnl|echTel1|scaffold_318019 (150619-150455) | |
| 1229-1337, gnl|fr1|chrUn (307378926-307378780) | |
| 1229-1337, gnl|galGal2|chr7 (35853706-35853840) | |
| 1229-1337, gnl|hg17|chr2 (152190015-152190181) | |
| 1229-1337, gnl|Hg17|chr2 (152190135-152190027) | |
| 1229-1337, gnl|loxAfr1|scaffold_313 (147478-147601) | |
| 1229-1337, gnl|mm7|chr2 (52169367-52169533) | |
| 1229-1337, gnl|Mm7|chr2 (52169487-52169379) | |
| 1229-1337, gnl|monDom2|scaffold_2 (42527459-42527621) | |
| 1229-1337, gnl|oryCun1|scaffold_196184 (61718-61824) | |
| 1229-1337, gnl|panTro1|chr13 (41252355-41252521) | |
| 1229-1337, gnl|rheMac2|chr12 (15147025-15147191) | |
| 1229-1337, gnl|rn3|chr3 (33553641-33553807) | |
| 1229-1337, gnl|tetNig1|chr2 (17995613-17995754) | |
| 1229-1337, gnl|xenTro1|scaffold_494 (732554-732720) | |
| 1338-1446, gnl|bosTau2|chr2 (9240416-9240308) | |
| 1338-1446, gnl|Hg17|chr2 (152189035-152188927) | |
| 1338-1446, gnl|Mm7|chr2 (52168786-52168678) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| ldo (0.970026) | |
| ste (0.676041) | |
| vin (0.665115) | |
| tbr (0.616713) | |
| sme (0.610874) | |
| ssp (0.406559) | |
| nms (0.213858) | |
| fty (0.17584) | |
| ton (0.1755) | |
| isp (0.150376) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ldo (0.970026) | |
| ste (0.676041) | |
| vin (0.665115) | |
| tbr (0.616713) | |
| sme (0.610874) | |
| ssp (0.406559) | |
| nms (0.213858) | |
| fty (0.17584) | |
| ton (0.1755) | |
| isp (0.150376) |