Non-Coding RNA Search

Ss1.1-sto228_g10.5.5

Sequence:


               
               TGATAAAATGAATGGTTCACATGACTGTGTGGCATCTAAAAATACCTATTTTTACAGCAT
CACTCTGCCACTAAATTGTTGACTTGAATTTTGAAAAACAAGTGGGTATTGATATGTATA
TGTGTGTGTGTATATATGTATTTATAGACATATGTGCGAGTGACAAGTGAGTTATATAGT
CTTCCCCTACGCATGTGTATTTCACACATACATGGCTGAGTTATAGTCACTAAACAATTT
GCAATAAAAAAAAGTTCTTTGTCAGTTAAAACAGGAAATAGTTAAGTTTTTAATGAATCT
GGTGTTATGGTGAGTAAACACTTTAGAGTTCTCATTACCATCTTAACTTAGGCTAATATC
TAATAGTATTATAATTTGTGTCTAAATTCAGATTGGGGTAGAAATTGAATTGTGGGGAGT
TGCTTCTTACTTCATGTTGTAATAGGAAATGTTTCTATTAATTCAGCTACCTAAGATAAA
ATGAATAGTTTTGGTTTTTTTCTTTTCTTTTTTATGTCATTGTTAGTGAGCTCAAAATTC
TGATCAATAACTTTGTGTATGATGCTGAATTACAAACTCTTTGAATGATCCAGTTGAAAA
CCCATCCCTCTACTTTCTTCAGCCCAGTTTTGGAGAGGGTTATTTTCCCTCAGTGTCCTG
TGTTACACCAACCCAAGGGAAGAACAGGTAACAGGGAGAAATAAATGTCTGTCTAGTGGC
TTTGGTCATGTCTCCACAAGAGAAACTAACCATTCAGTTGTCTTTTTATTTTAGTTCATT
CCACTCTAAGGAGTTTGTTCCCTTCAGTTGTTAAGACTTTGCAGCAGCAGCAGCAGTAGT
AGTTATCACTCTGTTGGTCTCACAGCCGATATGTCAATGGAAATTTTATGCTCCATAGTA
ATTATTAGTGGAGTCATGCACTGCATCTTTATCTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGATAAAATGAATGGTTCACATGACTGTGTGGCATCTAAAAATACCTATTTTTACAGCAT
CACTCTGCCACTAAATTGTTGACTTGAATTTTGAAAAACAAGTGGGTATTGATATGTATA
TGTGTGTGTGTATATATGTATTTATAGACATATGTGCGAGTGACAAGTGAGTTATATAGT
CTTCCCCTACGCATGTGTATTTCACACATACATGGCTGAGTTATAGTCACTAAACAATTT
GCAATAAAAAAAAGTTCTTTGTCAGTTAAAACAGGAAATAGTTAAGTTTTTAATGAATCT
GGTGTTATGGTGAGTAAACACTTTAGAGTTCTCATTACCATCTTAACTTAGGCTAATATC
TAATAGTATTATAATTTGTGTCTAAATTCAGATTGGGGTAGAAATTGAATTGTGGGGAGT
TGCTTCTTACTTCATGTTGTAATAGGAAATGTTTCTATTAATTCAGCTACCTAAGATAAA
ATGAATAGTTTTGGTTTTTTTCTTTTCTTTTTTATGTCATTGTTAGTGAGCTCAAAATTC
TGATCAATAACTTTGTGTATGATGCTGAATTACAAACTCTTTGAATGATCCAGTTGAAAA
CCCATCCCTCTACTTTCTTCAGCCCAGTTTTGGAGAGGGTTATTTTCCCTCAGTGTCCTG
TGTTACACCAACCCAAGGGAAGAACAGGTAACAGGGAGAAATAAATGTCTGTCTAGTGGC
TTTGGTCATGTCTCCACAAGAGAAACTAACCATTCAGTTGTCTTTTTATTTTAGTTCATT
CCACTCTAAGGAGTTTGTTCCCTTCAGTTGTTAAGACTTTGCAGCAGCAGCAGCAGTAGT
AGTTATCACTCTGTTGGTCTCACAGCCGATATGTCAATGGAAATTTTATGCTCCATAGTA
ATTATTAGTGGAGTCATGCACTGCATCTTTATCTTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               115-224, + strand, RNAz p=0.565504

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               115-224, + strand, RNAz p=0.565504

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-936, gnl|bosTau2|chr10 (9923724-9922790)
               

               
               1-936, gnl|Hg17|chr15 (66268907-66269837)
               

               
               1-936, gnl|Mm7|chr9 (62908701-62907794)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-936, gnl|bosTau2|chr10 (9923724-9922790)
               

               
               1-936, gnl|Hg17|chr15 (66268907-66269837)
               

               
               1-936, gnl|Mm7|chr9 (62908701-62907794)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               sto (0.179824)
               

               
               lin (0.145603)
               

               
               nmm (0.132802)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               cty (0.10408)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sto (0.179824)
               

               
               lin (0.145603)
               

               
               nmm (0.132802)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               cty (0.10408)

	1-936, gnl\|bosTau2\|chr10 (9923724-9922790)
	1-936, gnl\|Hg17\|chr15 (66268907-66269837)
	1-936, gnl\|Mm7\|chr9 (62908701-62907794)

	sto (0.179824)
	lin (0.145603)
	nmm (0.132802)
	tra (0.123092)
	eru (0.120048)
	cty (0.10408)