Non-Coding RNA Search

Ss1.1-uFN-UNL-P-FN-af-g-11-0-UNL.s1.3

Sequence:


               
               TTTATAGTTTGTGGTTCAGAAGCAACAATATGCAAAACGGTGGAACAGTCTGTGCTGCCC
CCACCCGACCCGGACGTGCCCACTCCTGTCCCCCGACAGGCCGAGAACCCAGGACCCCTG
CCCGACAGGACCCCGCTTAGTTACACGCCCCTGGGAGGAGCCAAGGCCTTAGGGGTCAAG
GTCGGGAGAGAGAGGGGGACCAGCACCTTGGGCCCCTGAGGCGGGCCGCTGGTTAACTGG
ATCCGCATACGTATGTGGAGGGTGGGGGAACGACCACGTTTGTCCCCAAGGCCAAGGGTG
GGAGGAGAGTAAAGCTGAGGAGAGGGCTTCGTGGGACAGGGACCCCCCCACCCGGAGGAG
GGGTTCTCCTCGACACCCCACAAGGCACTACTGACCCAGATGTAGGATGGCACGCCGCAT
CTTTGGCCCCCGAACCTCTCCCAACCCCGAGCTTGCCTGGTTCTCCCGGGCCCACCTCCC
ACTCCGGCTTTGGGGAGGGGGAGGAGAGGGGTCTGGACCCGGGTTCACCACTCCGCAGAG
ACAAACGACGAAACCGAGCAAGGCTAGCTGGGCTGGCTGGCTGGCTAGGACCCTCTCCCG
CTGCTCTGGGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTATAGTTTGTGGTTCAGAAGCAACAATATGCAAAACGGTGGAACAGTCTGTGCTGCCC
CCACCCGACCCGGACGTGCCCACTCCTGTCCCCCGACAGGCCGAGAACCCAGGACCCCTG
CCCGACAGGACCCCGCTTAGTTACACGCCCCTGGGAGGAGCCAAGGCCTTAGGGGTCAAG
GTCGGGAGAGAGAGGGGGACCAGCACCTTGGGCCCCTGAGGCGGGCCGCTGGTTAACTGG
ATCCGCATACGTATGTGGAGGGTGGGGGAACGACCACGTTTGTCCCCAAGGCCAAGGGTG
GGAGGAGAGTAAAGCTGAGGAGAGGGCTTCGTGGGACAGGGACCCCCCCACCCGGAGGAG
GGGTTCTCCTCGACACCCCACAAGGCACTACTGACCCAGATGTAGGATGGCACGCCGCAT
CTTTGGCCCCCGAACCTCTCCCAACCCCGAGCTTGCCTGGTTCTCCCGGGCCCACCTCCC
ACTCCGGCTTTGGGGAGGGGGAGGAGAGGGGTCTGGACCCGGGTTCACCACTCCGCAGAG
ACAAACGACGAAACCGAGCAAGGCTAGCTGGGCTGGCTGGCTGGCTAGGACCCTCTCCCG
CTGCTCTGGGCT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               82-240, - strand, RNAz p=0.996493
               

               
               418-532, - strand, RNAz p=0.781426

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               82-240, - strand, RNAz p=0.996493
               

               
               418-532, - strand, RNAz p=0.781426

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               97-225, - strand, RNAmicro p=0.968849
               

               
               461-559, - strand, RNAmicro p=0.93563

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               97-225, - strand, RNAmicro p=0.968849
               

               
               461-559, - strand, RNAmicro p=0.93563

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               3' of BC035500, -
               

               
               3' of BC035500, -

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC035500, -
               

               
               3' of BC035500, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-542, gnl|bosTau2|chr5 (19459460-19458920)
               

               
               3-542, gnl|Hg17|chr12 (50695920-50695400)
               

               
               3-542, gnl|Mm7|chr15 (101218577-101218021)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-542, gnl|bosTau2|chr5 (19459460-19458920)
               

               
               3-542, gnl|Hg17|chr12 (50695920-50695400)
               

               
               3-542, gnl|Mm7|chr15 (101218577-101218021)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               elu (0.385356)
               

               
               nlu (0.191681)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               nlu (0.191681)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)

	82-240, - strand, RNAz p=0.996493
	418-532, - strand, RNAz p=0.781426

	97-225, - strand, RNAmicro p=0.968849
	461-559, - strand, RNAmicro p=0.93563

	3-542, gnl\|bosTau2\|chr5 (19459460-19458920)
	3-542, gnl\|Hg17\|chr12 (50695920-50695400)
	3-542, gnl\|Mm7\|chr15 (101218577-101218021)