Ss1.1-uFN-UNL-P-FN-ak-c-07-0-UNL.s1.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAGTCGTCAGAATGGAATCCAGACAAACAAGCCAGCTCTGCGGGCTGTCCGGCAGCGCA GTGAATTCACCCTCATGGCCAAGCGCATTGGCAAAGACCTCAGCAACACCTTTGCCAAGC TGGAGAAGCTGACAATCCTGGCCAAGCGCAAGTCCCTCTTTGATGATAAAGCAGTGGAAA TCGAGGAGCTAACTTATATCATCAAACAGGACATCAATAGCCTCAACAAGCAAATCGCCC AGCTTCAGGATTTCGTGAGAGCCAAGGGCAGCCAGAGCGGCCGGCACCTGCAGACGCATT CCAACACCATTGTGGTCTCCCTGCAGTCGAAGCTGGCCTCCATGTCCAATGACTTCAAAT CAGTTTTGGAAGTGAGGACAGAGAACCTGAAGCAGCAGAGGAGCCGGCGGGAGCAGTTCT CCCGGGCACCCGTGTCAGCCCTGCCCCTCGCGCCCAACCACCTCGGGGGCGGTGCTGTGG TTTTGGGGGCAGAGTCCCGAGCCTCTGGGGACGTGGCCATTGACATGATGGATTCTAGGA CCAGCCAGCAGCTGCAGCTCATTGATGAGCAGGACTCCTACATCCAGACCCGGGCAGACA CCATGCAGAACATTGAGTCCACAATTGTGGAGCTTGGCTCCATCTTCCAGCAGTTGGCAC ACATGGTTAAGGAACAGGAAGAAACCATTCAGAGGATCGACGAGAACGTGCTAGGAGCCC AGCTGGACGTTGAGGCCGCCCACTCGGAGATCCTCAAGTACTTCCAGTCGGTCACGTCCA ACCGGTGGCTTATGGTCAAAATCTTCCTCATCCTCATTGTCTTCTTCATCATCTTCGTGG TCTTCCTTGCCTGAACCCTCTCCAACGCTGAGGCATTCCGTGGGGGTTTGGAACCCTCCT GGGAGGGCAGGTGGCCAGAGCTGCCACTGAGCCTGTGCAGGGTGCTTGGGAGAAAGGCCC TGTTTCCCTGGAACTGCTAAGAACGGCCACTGCCCCTGATCTCCCACTCCTTGCCTCTGG CCACCCTGTCCTCCCCTCACCATCCTCAGGCCCATGAAACACACGGTTCTGGATTTGGAC TCTGCTGTGAAGTGGCTGGAAGGGAGCAGAGGCCAACTGGAGGGCTCTTCGGGGAGGTTG TCTCCACTGGAGATTTTTATAAACCCTCCCCAGCCTTTCTCAACTCTGGCAGCAAGGGGA GATGATGCCCTTCCCCACCTTCCTGAGAGTGAGGAGAGGAAGTGAAACTTCCCCAGGGAC CAACTTTCCCATCTGGGTTAAAATTTACCTCTTCCTCTCTTCACCATGTGAGGCAAGGGG CCCTGAGCCCTTTGGCTGCCTACACAACCCCAACTCTGGCTGCAGATGACTCTCAATCTG CCAAATGTGCTGCGGCCCGTTTCCTCCCAATTACAACAAGACTGTCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAGTCGTCAGAATGGAATCCAGACAAACAAGCCAGCTCTGCGGGCTGTCCGGCAGCGCA GTGAATTCACCCTCATGGCCAAGCGCATTGGCAAAGACCTCAGCAACACCTTTGCCAAGC TGGAGAAGCTGACAATCCTGGCCAAGCGCAAGTCCCTCTTTGATGATAAAGCAGTGGAAA TCGAGGAGCTAACTTATATCATCAAACAGGACATCAATAGCCTCAACAAGCAAATCGCCC AGCTTCAGGATTTCGTGAGAGCCAAGGGCAGCCAGAGCGGCCGGCACCTGCAGACGCATT CCAACACCATTGTGGTCTCCCTGCAGTCGAAGCTGGCCTCCATGTCCAATGACTTCAAAT CAGTTTTGGAAGTGAGGACAGAGAACCTGAAGCAGCAGAGGAGCCGGCGGGAGCAGTTCT CCCGGGCACCCGTGTCAGCCCTGCCCCTCGCGCCCAACCACCTCGGGGGCGGTGCTGTGG TTTTGGGGGCAGAGTCCCGAGCCTCTGGGGACGTGGCCATTGACATGATGGATTCTAGGA CCAGCCAGCAGCTGCAGCTCATTGATGAGCAGGACTCCTACATCCAGACCCGGGCAGACA CCATGCAGAACATTGAGTCCACAATTGTGGAGCTTGGCTCCATCTTCCAGCAGTTGGCAC ACATGGTTAAGGAACAGGAAGAAACCATTCAGAGGATCGACGAGAACGTGCTAGGAGCCC AGCTGGACGTTGAGGCCGCCCACTCGGAGATCCTCAAGTACTTCCAGTCGGTCACGTCCA ACCGGTGGCTTATGGTCAAAATCTTCCTCATCCTCATTGTCTTCTTCATCATCTTCGTGG TCTTCCTTGCCTGAACCCTCTCCAACGCTGAGGCATTCCGTGGGGGTTTGGAACCCTCCT GGGAGGGCAGGTGGCCAGAGCTGCCACTGAGCCTGTGCAGGGTGCTTGGGAGAAAGGCCC TGTTTCCCTGGAACTGCTAAGAACGGCCACTGCCCCTGATCTCCCACTCCTTGCCTCTGG CCACCCTGTCCTCCCCTCACCATCCTCAGGCCCATGAAACACACGGTTCTGGATTTGGAC TCTGCTGTGAAGTGGCTGGAAGGGAGCAGAGGCCAACTGGAGGGCTCTTCGGGGAGGTTG TCTCCACTGGAGATTTTTATAAACCCTCCCCAGCCTTTCTCAACTCTGGCAGCAAGGGGA GATGATGCCCTTCCCCACCTTCCTGAGAGTGAGGAGAGGAAGTGAAACTTCCCCAGGGAC CAACTTTCCCATCTGGGTTAAAATTTACCTCTTCCTCTCTTCACCATGTGAGGCAAGGGG CCCTGAGCCCTTTGGCTGCCTACACAACCCCAACTCTGGCTGCAGATGACTCTCAATCTG CCAAATGTGCTGCGGCCCGTTTCCTCCCAATTACAACAAGACTGTCAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1119-1228, - strand, RNAz p=0.998651 | |
| 1269-1418, - strand, RNAz p=0.770334 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1119-1228, - strand, RNAz p=0.998651 | |
| 1269-1418, - strand, RNAz p=0.770334 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 207-326, gnl|bosTau2|chr29 (32632108-32632227) | |
| 207-326, gnl|canFam2|chr18 (56896810-56896710) | |
| 207-326, gnl|danRer3|chr14 (4822381-4822282) | |
| 207-326, gnl|dasNov1|scaffold_97373 (4193-4093) | |
| 207-326, gnl|fr1|chrUn (49416027-49416127) | |
| 207-326, gnl|hg17|chr11 (62349469-62349569) | |
| 207-326, gnl|Hg17|chr11 (62349590-62349471) | |
| 207-326, gnl|loxAfr1|scaffold_98523 (1126-1225) | |
| 207-326, gnl|mm7|chr19 (8428743-8428643) | |
| 207-326, gnl|Mm7|chr19 (8428620-8428739) | |
| 207-326, gnl|monDom2|scaffold_150 (1157338-1157438) | |
| 207-326, gnl|oryCun1|scaffold_133394 (9247-9147) | |
| 207-326, gnl|panTro1|chr9 (63345178-63345278) | |
| 207-326, gnl|rheMac2|chr14 (11258044-11257944) | |
| 207-326, gnl|rn3|chr1 (211576010-211575910) | |
| 207-326, gnl|tetNig1|chr1 (8106536-8106636) | |
| 207-326, gnl|xenTro1|scaffold_1220 (116102-116202) | |
| 571-695, gnl|bosTau2|chr29 (32633349-32633473) | |
| 571-695, gnl|canFam2|chr18 (56898072-56897929) | |
| 571-695, gnl|danRer3|chr14 (4826747-4826622) | |
| 571-695, gnl|dasNov1|scaffold_144756 (1462-1341) | |
| 571-695, gnl|fr1|chrUn (49414243-49414390) | |
| 571-695, gnl|hg17|chr11 (62348207-62348354) | |
| 571-695, gnl|Hg17|chr11 (62348337-62348213) | |
| 571-695, gnl|loxAfr1|scaffold_591 (72012-71885) | |
| 571-695, gnl|mm7|chr19 (8430198-8430055) | |
| 571-695, gnl|Mm7|chr19 (8430066-8430190) | |
| 571-695, gnl|monDom2|scaffold_150 (1155542-1155704) | |
| 571-695, gnl|oryCun1|scaffold_133394 (10485-10338) | |
| 571-695, gnl|panTro1|chr9 (63343918-63344065) | |
| 571-695, gnl|rheMac2|chr14 (11259308-11259161) | |
| 571-695, gnl|rn3|chr1 (211577393-211577250) | |
| 571-695, gnl|tetNig1|chr1 (8104709-8104834) | |
| 571-695, gnl|xenTro1|scaffold_1220 (113105-113245) | |
| 1119-1428, gnl|bosTau2|chr24 (2673550-2673235) | |
| 1119-1428, gnl|Hg17|chr11 (62331242-62330950) | |
| 1119-1428, gnl|Mm7|chr19 (8435493-8435799) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 207-326, gnl|bosTau2|chr29 (32632108-32632227) | |
| 207-326, gnl|canFam2|chr18 (56896810-56896710) | |
| 207-326, gnl|danRer3|chr14 (4822381-4822282) | |
| 207-326, gnl|dasNov1|scaffold_97373 (4193-4093) | |
| 207-326, gnl|fr1|chrUn (49416027-49416127) | |
| 207-326, gnl|hg17|chr11 (62349469-62349569) | |
| 207-326, gnl|Hg17|chr11 (62349590-62349471) | |
| 207-326, gnl|loxAfr1|scaffold_98523 (1126-1225) | |
| 207-326, gnl|mm7|chr19 (8428743-8428643) | |
| 207-326, gnl|Mm7|chr19 (8428620-8428739) | |
| 207-326, gnl|monDom2|scaffold_150 (1157338-1157438) | |
| 207-326, gnl|oryCun1|scaffold_133394 (9247-9147) | |
| 207-326, gnl|panTro1|chr9 (63345178-63345278) | |
| 207-326, gnl|rheMac2|chr14 (11258044-11257944) | |
| 207-326, gnl|rn3|chr1 (211576010-211575910) | |
| 207-326, gnl|tetNig1|chr1 (8106536-8106636) | |
| 207-326, gnl|xenTro1|scaffold_1220 (116102-116202) | |
| 571-695, gnl|bosTau2|chr29 (32633349-32633473) | |
| 571-695, gnl|canFam2|chr18 (56898072-56897929) | |
| 571-695, gnl|danRer3|chr14 (4826747-4826622) | |
| 571-695, gnl|dasNov1|scaffold_144756 (1462-1341) | |
| 571-695, gnl|fr1|chrUn (49414243-49414390) | |
| 571-695, gnl|hg17|chr11 (62348207-62348354) | |
| 571-695, gnl|Hg17|chr11 (62348337-62348213) | |
| 571-695, gnl|loxAfr1|scaffold_591 (72012-71885) | |
| 571-695, gnl|mm7|chr19 (8430198-8430055) | |
| 571-695, gnl|Mm7|chr19 (8430066-8430190) | |
| 571-695, gnl|monDom2|scaffold_150 (1155542-1155704) | |
| 571-695, gnl|oryCun1|scaffold_133394 (10485-10338) | |
| 571-695, gnl|panTro1|chr9 (63343918-63344065) | |
| 571-695, gnl|rheMac2|chr14 (11259308-11259161) | |
| 571-695, gnl|rn3|chr1 (211577393-211577250) | |
| 571-695, gnl|tetNig1|chr1 (8104709-8104834) | |
| 571-695, gnl|xenTro1|scaffold_1220 (113105-113245) | |
| 1119-1428, gnl|bosTau2|chr24 (2673550-2673235) | |
| 1119-1428, gnl|Hg17|chr11 (62331242-62330950) | |
| 1119-1428, gnl|Mm7|chr19 (8435493-8435799) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| pla (0.401016) | |
| mcp (0.341297) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| fty (0.17584) | |
| ill (0.175593) | |
| nco (0.161734) | |
| csp (0.161186) | |
| lnt (0.142308) | |
| eep (0.122564) | |
| med (0.116252) | |
| jca (0.11396) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.401016) | |
| mcp (0.341297) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| fty (0.17584) | |
| ill (0.175593) | |
| nco (0.161734) | |
| csp (0.161186) | |
| lnt (0.142308) | |
| eep (0.122564) | |
| med (0.116252) | |
| jca (0.11396) | |
| cty (0.10408) | |
| eje (0.0988338) |