Non-Coding RNA Search

Ss1.1-uFN-UNL-P-FN-al-c-10-0-UNL.s1.3

Sequence:


               
               GTACAGAAGTCCGCGAGGTAGGTAGTATAGAACGAAAGGACAGCTCACCACCGTGACGGA
CCGCCGCTCCTGACTCTCCAGGCCATGGGCCCGCGGAGCCGCGAGCGTCGCGCGGGAGCA
GTGCAGAGTACCAATGACAGCAGCGCCCTCAGCAAGAGCTCCCTGGCCGCGCGCGGGTAC
GTGCACGACACCTTTGCCGCCTTGCTAGTTCCGGCGTCCGTGCGCCGCGCGCCGCTGATC
CACCGCGGCTACTACGTCCGCGCACGCGCCGTGCGGCACTGCGTATGCGCATTCCTGGAG
GGGACGCGCGCGGCTCTCGGCGCGCCCCACATCCAGATCCTGTCTCTGGGCGCCGGCTCG
GACTCGCTGTATTTTCGCCTTAAAGCTGCGGGCCGCCTCCCCGGGGCTGCAGTCTGGGAG
GTGGATTTTCCGGACGTGGCGCGGCGCAAAGCGGACAGGATTCGAGATACGCCGGAACTG
TGCGCGTTAACCGGGCCTTTCCGGCGCGGGGACGCCGGGTCAACGCTATGCTTCGAGAGC
TCGGACTACCGCATCCTGGGGCTGGACCTGCGGCAGGTGCAGCGGTTGGACCAGGCACTG
GCCGCCGCGGGCCTAGACGCGGCCGCACCGACTCTGCTCCTGGCTGAGGCCGTGCTGACC
TACCTCGAGCCGAATAATGCCGCGGCCCTCATCGCCTGGGCCGCCCAGTGTTTTTCTGAT
GCGCTTTTTGTCGTTTACGAGCAGATGAGGCCGCATGACGCCTTCGGCCAGTTCATGCAG
CAACATTTTCGGCAGCTGAATTCACCCCTGCATGGCCTGGACCGCTTTCCTGACGCGGAG
GCCCAGCAGCAGCGCTTTCTCCAGGCCGGCTGGACTGCCTGCCGTGCCTTGGACATGAAT
GAGTTTTATCGCCATTTTCTCCCCGCAGAAGAACGCCGGCGCGTAGAAAATCTTGAACCT
TTTGACGAGTTTGAGGAGTGGCATCTGAAGTGCTCCCACTATTTCATTCTGGCCGCTTCT
CGGGGAGACATTGTCTCCCAAACTGTAGTGTTCCCAGCATCAGAGACGTTTCCTCGGATA
GATCCTGCCTCCCCTTCCGGAGTCATCCCTGCTCGTGTAGTCACTAGTGATAGCCAGGGT
CCAGACCTTAAGAGATATGGCCATGCCTCTGTCCTTTTGAGCCCAGACGTTATTCTTAGT
GCAGGAGGGTTTGGAGAAGAGGAGGGGCGGCACTGCCGAGTGAGCAAGTTTCACTTGCTC
TCAAGATACTGTGACTTTGAATGGAAAGGCAATCAAGTATGTAGTTGGGGAACTGGAGCT
CAGTGGGATAGACGCCTTTATCACACCATGACAAGACTTTCAGATACTCAGGTTCTGGTT
CTGGGAGGGAGATTGTCCCCTGTAACTCCCGCCTTGGGGATTCTCCAGCTACATTTTGGG
AAACATGTGGGTGGTAAAACTGAGGGCCTAAATATCACAGTCACAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTACAGAAGTCCGCGAGGTAGGTAGTATAGAACGAAAGGACAGCTCACCACCGTGACGGA
CCGCCGCTCCTGACTCTCCAGGCCATGGGCCCGCGGAGCCGCGAGCGTCGCGCGGGAGCA
GTGCAGAGTACCAATGACAGCAGCGCCCTCAGCAAGAGCTCCCTGGCCGCGCGCGGGTAC
GTGCACGACACCTTTGCCGCCTTGCTAGTTCCGGCGTCCGTGCGCCGCGCGCCGCTGATC
CACCGCGGCTACTACGTCCGCGCACGCGCCGTGCGGCACTGCGTATGCGCATTCCTGGAG
GGGACGCGCGCGGCTCTCGGCGCGCCCCACATCCAGATCCTGTCTCTGGGCGCCGGCTCG
GACTCGCTGTATTTTCGCCTTAAAGCTGCGGGCCGCCTCCCCGGGGCTGCAGTCTGGGAG
GTGGATTTTCCGGACGTGGCGCGGCGCAAAGCGGACAGGATTCGAGATACGCCGGAACTG
TGCGCGTTAACCGGGCCTTTCCGGCGCGGGGACGCCGGGTCAACGCTATGCTTCGAGAGC
TCGGACTACCGCATCCTGGGGCTGGACCTGCGGCAGGTGCAGCGGTTGGACCAGGCACTG
GCCGCCGCGGGCCTAGACGCGGCCGCACCGACTCTGCTCCTGGCTGAGGCCGTGCTGACC
TACCTCGAGCCGAATAATGCCGCGGCCCTCATCGCCTGGGCCGCCCAGTGTTTTTCTGAT
GCGCTTTTTGTCGTTTACGAGCAGATGAGGCCGCATGACGCCTTCGGCCAGTTCATGCAG
CAACATTTTCGGCAGCTGAATTCACCCCTGCATGGCCTGGACCGCTTTCCTGACGCGGAG
GCCCAGCAGCAGCGCTTTCTCCAGGCCGGCTGGACTGCCTGCCGTGCCTTGGACATGAAT
GAGTTTTATCGCCATTTTCTCCCCGCAGAAGAACGCCGGCGCGTAGAAAATCTTGAACCT
TTTGACGAGTTTGAGGAGTGGCATCTGAAGTGCTCCCACTATTTCATTCTGGCCGCTTCT
CGGGGAGACATTGTCTCCCAAACTGTAGTGTTCCCAGCATCAGAGACGTTTCCTCGGATA
GATCCTGCCTCCCCTTCCGGAGTCATCCCTGCTCGTGTAGTCACTAGTGATAGCCAGGGT
CCAGACCTTAAGAGATATGGCCATGCCTCTGTCCTTTTGAGCCCAGACGTTATTCTTAGT
GCAGGAGGGTTTGGAGAAGAGGAGGGGCGGCACTGCCGAGTGAGCAAGTTTCACTTGCTC
TCAAGATACTGTGACTTTGAATGGAAAGGCAATCAAGTATGTAGTTGGGGAACTGGAGCT
CAGTGGGATAGACGCCTTTATCACACCATGACAAGACTTTCAGATACTCAGGTTCTGGTT
CTGGGAGGGAGATTGTCCCCTGTAACTCCCGCCTTGGGGATTCTCCAGCTACATTTTGGG
AAACATGTGGGTGGTAAAACTGAGGGCCTAAATATCACAGTCACAAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6J9L3_PANTR

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6J9L3_PANTR

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               941-1180, - strand, RNAz p=0.994866

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               941-1180, - strand, RNAz p=0.994866

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               23-1488, gnl|bosTau2|chr21 (37505051-37503589)
               

               
               23-1488, gnl|Hg17|chr15 (41410034-41408576)
               

               
               23-1488, gnl|Mm7|chr2 (120881467-120880046)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               23-1488, gnl|bosTau2|chr21 (37505051-37503589)
               

               
               23-1488, gnl|Hg17|chr15 (41410034-41408576)
               

               
               23-1488, gnl|Mm7|chr2 (120881467-120880046)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	23-1488, gnl\|bosTau2\|chr21 (37505051-37503589)
	23-1488, gnl\|Hg17\|chr15 (41410034-41408576)
	23-1488, gnl\|Mm7\|chr2 (120881467-120880046)