Non-Coding RNA Search

Ss1.1-uFN-UNL-P-FN-al-h-12-0-UNL.s1.3

Sequence:


               
               TCGAGTGCGATCCCCACACTCATGAACATACACAGGTCTACCCCCATCACAATAGCAAGA
TATGGGAGATCGCGGAACAAAACCCAGGATTTCGAAGAGTTGTCGTCTATAAGGTCCGCC
GAACCCAGCCAGAGTTTTAGCCCGAACCTCGGCTCCCCGAGCCCGCCCGAGACTCCGAAC
TTGTCGCATTGCGTTTCTTGCATCGGGAAATACTTATTGTTGGAACCTCTGGAGGGAGAC
CACGTTTTTCGTGCCGTGCATCTGCACACTGGAGAGGAGCTGGTGTGCAAGGTGTTTGAC
ATCGGCTGCTACCAGGAGTCCCTGGCCCCCTGCTTCTGCCTGTCTGCTCACAGCAACATC
AACCAAATCACCGAAATTATCCTGGGGGAGACCAAAGCCTATGTGTTCTTTGAGCGGAGC
TATGGGGACATGCATTCCTTCGTGCGCACCTGCAAGAAGCTGAGGGAGGAGGAGGCGGCC
AGACTGTTCTACCAGATCGCCTCGGCGGTGGCCCACTGCCACGACGGGGGGCTGGTGCTG
CGCGATCTCAAGCTGCGCAAGTTTATCTTTAAGGACGAAGAAAGGACTCGGGTCAAGCTG
GAGAGCTTGGAAGATGCCTACATTCTACGAGGAGACGATGACTCCCTCTCTGACAAACAC
GGCTGCCCGGCGTACGTCAGCCCGGAGATCTTGAACACCAGCGGCAGCTACTCGGGCAAG
GCGGCTGATGTGTGGAGCCTGGGCGTGATGCTGTACACCATGCTGGTCGGGCGGTACCCT
TTCCATGACATTGAGCCCAGCTCCCTCTTCAGCAAGATCCGGCGCGGCCAGTTCAACATT
CCAGAGACCCTGTCGCCCAAGGCCAAGTGCCTCATCCGAAGCATCCTGCGGCGGGAGCCC
TCAGAGAGGCTGACCTCGCAGGAGATTCTGGACCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGAGTGCGATCCCCACACTCATGAACATACACAGGTCTACCCCCATCACAATAGCAAGA
TATGGGAGATCGCGGAACAAAACCCAGGATTTCGAAGAGTTGTCGTCTATAAGGTCCGCC
GAACCCAGCCAGAGTTTTAGCCCGAACCTCGGCTCCCCGAGCCCGCCCGAGACTCCGAAC
TTGTCGCATTGCGTTTCTTGCATCGGGAAATACTTATTGTTGGAACCTCTGGAGGGAGAC
CACGTTTTTCGTGCCGTGCATCTGCACACTGGAGAGGAGCTGGTGTGCAAGGTGTTTGAC
ATCGGCTGCTACCAGGAGTCCCTGGCCCCCTGCTTCTGCCTGTCTGCTCACAGCAACATC
AACCAAATCACCGAAATTATCCTGGGGGAGACCAAAGCCTATGTGTTCTTTGAGCGGAGC
TATGGGGACATGCATTCCTTCGTGCGCACCTGCAAGAAGCTGAGGGAGGAGGAGGCGGCC
AGACTGTTCTACCAGATCGCCTCGGCGGTGGCCCACTGCCACGACGGGGGGCTGGTGCTG
CGCGATCTCAAGCTGCGCAAGTTTATCTTTAAGGACGAAGAAAGGACTCGGGTCAAGCTG
GAGAGCTTGGAAGATGCCTACATTCTACGAGGAGACGATGACTCCCTCTCTGACAAACAC
GGCTGCCCGGCGTACGTCAGCCCGGAGATCTTGAACACCAGCGGCAGCTACTCGGGCAAG
GCGGCTGATGTGTGGAGCCTGGGCGTGATGCTGTACACCATGCTGGTCGGGCGGTACCCT
TTCCATGACATTGAGCCCAGCTCCCTCTTCAGCAAGATCCGGCGCGGCCAGTTCAACATT
CCAGAGACCCTGTCGCCCAAGGCCAAGTGCCTCATCCGAAGCATCCTGCGGCGGGAGCCC
TCAGAGAGGCTGACCTCGCAGGAGATTCTGGACCAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|62822467|gb|AAY15015.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62822467|gb|AAY15015.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-293, gnl|bosTau2|chr26 (31397904-31398196)
               

               
               1-293, gnl|Hg17|chr2 (12809011-12809303)
               

               
               1-293, gnl|Mm7|chr12 (15869949-15869644)
               


               
               583-936, gnl|bosTau2|chr26 (31422688-31423041)
               

               
               583-936, gnl|Hg17|chr2 (12831048-12831401)
               

               
               583-936, gnl|Mm7|chr12 (15848493-15848140)
               


               
               597-914, gnl|bosTau2|chr13 (41884990-41885307)
               

               
               597-914, gnl|Hg17|chr20 (324854-325171)
               

               
               597-914, gnl|Mm7|chr2 (152079532-152079215)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-293, gnl|bosTau2|chr26 (31397904-31398196)
               

               
               1-293, gnl|Hg17|chr2 (12809011-12809303)
               

               
               1-293, gnl|Mm7|chr12 (15869949-15869644)
               


               
               583-936, gnl|bosTau2|chr26 (31422688-31423041)
               

               
               583-936, gnl|Hg17|chr2 (12831048-12831401)
               

               
               583-936, gnl|Mm7|chr12 (15848493-15848140)
               


               
               597-914, gnl|bosTau2|chr13 (41884990-41885307)
               

               
               597-914, gnl|Hg17|chr20 (324854-325171)
               

               
               597-914, gnl|Mm7|chr2 (152079532-152079215)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ece (0.229305)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               ecc (0.115035)

	1-293, gnl\|bosTau2\|chr26 (31397904-31398196)
	1-293, gnl\|Hg17\|chr2 (12809011-12809303)
	1-293, gnl\|Mm7\|chr12 (15869949-15869644)

	583-936, gnl\|bosTau2\|chr26 (31422688-31423041)
	583-936, gnl\|Hg17\|chr2 (12831048-12831401)
	583-936, gnl\|Mm7\|chr12 (15848493-15848140)

	597-914, gnl\|bosTau2\|chr13 (41884990-41885307)
	597-914, gnl\|Hg17\|chr20 (324854-325171)
	597-914, gnl\|Mm7\|chr2 (152079532-152079215)