Non-Coding RNA Search

Ss1.1-uFN-UNL-P-FN-ay-f-10-0-UNL.s2.3

Sequence:


               
               TATACACAGCATGCACACACAGCACCAGCACGGCTAATCCTGCCTGCCATCTTAGCCTCG
CAGAAGCAAGATACAAACTGCATGCAGCACACAAGCTGGGGAAGGAGGAGGCAAGGGACA
GCTCACCTTAAATGCAGTATCTGATTAATGTTGTAAGTGACATTGCATATCAGCCTCAGA
GTCTTGGTTCAACAAATTAATGATCACAGCATTCAGATCTTATAGCCGGAAGAAGAGTGG
TTTAGCAGAGCCTCACTTCAAGACAACTCGGAGGCGCTGGCTTCTCTGAAACCCACACGC
TGCCAACTCCCTGGGCTCAGGAGTTATAACCGCTGTCTTGCTCTGGGTTCTTCACTTCTG
GTCGAGATCAGCTCCACATATTTTTCTGATGATGTCATCCATGCTGACTTCCTACATTTT
GAAAGTTGATCTATAAGTAAAAGCTTCTGGGAGGCTTCAAAACAAAAAAGCAGCAGCAGA
AAAGAAAAGAAAGGTGTGCTGTGGGGCGATGGAGAGGAGGAGGAGAGAGGCGCTTGCCTC
CTTATTTTGAGATTTGCTGCAGCCTGAGTGCCAGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATACACAGCATGCACACACAGCACCAGCACGGCTAATCCTGCCTGCCATCTTAGCCTCG
CAGAAGCAAGATACAAACTGCATGCAGCACACAAGCTGGGGAAGGAGGAGGCAAGGGACA
GCTCACCTTAAATGCAGTATCTGATTAATGTTGTAAGTGACATTGCATATCAGCCTCAGA
GTCTTGGTTCAACAAATTAATGATCACAGCATTCAGATCTTATAGCCGGAAGAAGAGTGG
TTTAGCAGAGCCTCACTTCAAGACAACTCGGAGGCGCTGGCTTCTCTGAAACCCACACGC
TGCCAACTCCCTGGGCTCAGGAGTTATAACCGCTGTCTTGCTCTGGGTTCTTCACTTCTG
GTCGAGATCAGCTCCACATATTTTTCTGATGATGTCATCCATGCTGACTTCCTACATTTT
GAAAGTTGATCTATAAGTAAAAGCTTCTGGGAGGCTTCAAAACAAAAAAGCAGCAGCAGA
AAAGAAAAGAAAGGTGTGCTGTGGGGCGATGGAGAGGAGGAGGAGAGAGGCGCTTGCCTC
CTTATTTTGAGATTTGCTGCAGCCTGAGTGCCAGCG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               463-573, + strand, RNAz p=0.954635

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               463-573, + strand, RNAz p=0.954635

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-193, gnl|bosTau2|chr1 (79731219-79731410)
               

               
               3-193, gnl|Hg17|chr3 (142588603-142588411)
               

               
               3-193, gnl|Mm7|chr9 (96373763-96373957)
               


               
               266-573, gnl|bosTau2|chr1 (79750696-79751016)
               

               
               266-573, gnl|Hg17|chr3 (142570346-142570054)
               

               
               266-573, gnl|Mm7|chr9 (96394026-96394318)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-193, gnl|bosTau2|chr1 (79731219-79731410)
               

               
               3-193, gnl|Hg17|chr3 (142588603-142588411)
               

               
               3-193, gnl|Mm7|chr9 (96373763-96373957)
               


               
               266-573, gnl|bosTau2|chr1 (79750696-79751016)
               

               
               266-573, gnl|Hg17|chr3 (142570346-142570054)
               

               
               266-573, gnl|Mm7|chr9 (96394026-96394318)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	3-193, gnl\|bosTau2\|chr1 (79731219-79731410)
	3-193, gnl\|Hg17\|chr3 (142588603-142588411)
	3-193, gnl\|Mm7\|chr9 (96373763-96373957)

	266-573, gnl\|bosTau2\|chr1 (79750696-79751016)
	266-573, gnl\|Hg17\|chr3 (142570346-142570054)
	266-573, gnl\|Mm7\|chr9 (96394026-96394318)