Non-Coding RNA Search

Ss1.1-uFN-UNL-P-FN-ay-g-06-0-UNL.s1.3

Sequence:


               
               GGTCACTCCCCAAGTCTCAGCCGGCTGCTCTGCAGACAGGAGGCCCTGGCCACCCAGTCC
CTGGAGGGGCAGGTTGGCAGCCCCGGGGACAGCAGTCCCAGTTGGGGAGAGCCTGGCAGG
AAGACCCCCGGGAGGCAGGCGACCCTGGGGGCCTCCGTGTGCTCCCCACCCCGTTCCCCA
CGGCCCGCCAGTGTCCGCATCCGCAAGCACACTTTTGGGCAGCACTGCATCTCCAGCCGG
CCACCAGCCCCAGGCAGGGAGGAGGCTGAGGCCCCGGACCCGGCCGACGAGGAGGTCAGC
CACATCACCAGCTCCGCCCGCGGCCCCGTGGCCTCGCCTGCGGCCTGCGAGCCAGACTTG
CACCGGCTCTACAGTGTCGATGCCCAGGGCTTCCTGGACCAGCCGGGCCAGGCGGACGAG
CAGAGGCGGCCCTCGGTGGAGCAGGGCTGCGGGGATGGCCTCCCAGAGGCGGGGGTGGTG
AAGGCTCGGGCCCCGGAGGCTGAGCTGGCCCTGGGCGCACGCAGGAAGAAGAAGATGAGC
CCGCCCTGCATCTCTGTTGAGCCCCCCGCAGAGGACGAGGGCACAGCCCGGCCCCCTGTG
GCTGAGGGCAGCAGCACCACCCTCCGGCGAAGAACCCCGTCCTGCGAGGCCGCGCCGCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTCACTCCCCAAGTCTCAGCCGGCTGCTCTGCAGACAGGAGGCCCTGGCCACCCAGTCC
CTGGAGGGGCAGGTTGGCAGCCCCGGGGACAGCAGTCCCAGTTGGGGAGAGCCTGGCAGG
AAGACCCCCGGGAGGCAGGCGACCCTGGGGGCCTCCGTGTGCTCCCCACCCCGTTCCCCA
CGGCCCGCCAGTGTCCGCATCCGCAAGCACACTTTTGGGCAGCACTGCATCTCCAGCCGG
CCACCAGCCCCAGGCAGGGAGGAGGCTGAGGCCCCGGACCCGGCCGACGAGGAGGTCAGC
CACATCACCAGCTCCGCCCGCGGCCCCGTGGCCTCGCCTGCGGCCTGCGAGCCAGACTTG
CACCGGCTCTACAGTGTCGATGCCCAGGGCTTCCTGGACCAGCCGGGCCAGGCGGACGAG
CAGAGGCGGCCCTCGGTGGAGCAGGGCTGCGGGGATGGCCTCCCAGAGGCGGGGGTGGTG
AAGGCTCGGGCCCCGGAGGCTGAGCTGGCCCTGGGCGCACGCAGGAAGAAGAAGATGAGC
CCGCCCTGCATCTCTGTTGAGCCCCCCGCAGAGGACGAGGGCACAGCCCGGCCCCCTGTG
GCTGAGGGCAGCAGCACCACCCTCCGGCGAAGAACCCCGTCCTGCGAGGCCGCGCCGCAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               422-541, - strand, RNAz p=0.723315

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               422-541, - strand, RNAz p=0.723315

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               475-567, + strand, RNAmicro p=0.918164

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               475-567, + strand, RNAmicro p=0.918164

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               37-659, gnl|bosTau2|chr25 (814138-813501)
               

               
               37-659, gnl|Hg17|chr16 (1209979-1210616)
               

               
               37-659, gnl|Mm7|chr17 (23559240-23558570)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               37-659, gnl|bosTau2|chr25 (814138-813501)
               

               
               37-659, gnl|Hg17|chr16 (1209979-1210616)
               

               
               37-659, gnl|Mm7|chr17 (23559240-23558570)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	37-659, gnl\|bosTau2\|chr25 (814138-813501)
	37-659, gnl\|Hg17\|chr16 (1209979-1210616)
	37-659, gnl\|Mm7\|chr17 (23559240-23558570)