Non-Coding RNA Search

Ss1.1-uFN-UNL-P-FN-az-a-10-0-UNL.s2.3

Sequence:


               
               TCTAAATACTTATTCCAAATTTAAAATGAGACCAAATCTAAAATATTTGGTCTAAAACGA
GGTCATACTCCAAAATTCACCAAAAATGTCCAAAAACTGTCATTATTTCTCTGTCTTCCT
GAGATTATTGGTGTACTTTTAGAAGTTGGCAGGGAAGCAGTGTCATATTACATGAAAAAT
TTACTACCTCAAAGTGTAAAAGACTTTTCCATTTGTGTCTTGACAGTGGAGTCTAATTAT
ATTTAAGGATTTCCACTAAGGGTTATAGTTTAATTTAGTGGTATATATTTGAACTATATA
CTGGTCAGAGGCTTTTGCAACAGTTGTGACAGCTGCTGAAAAAATGGATGCAAGTTCTGT
AACCTCAGAAGAAAGGAATGAAATTATCCATGCACGGTTTATTAGAGCCGTTTCTGAACT
AGAACTTTTAGGATTTATCAAACCCACCAAACAGAAGACTGACCATGTGGCAAGGTTAAC
GTGGGGAGGCTGTTAGAAAGCAAATGAATGAAGCCAGAAAGATAACATTTAGATTAAGAG
AAAAAGGGGACCATTCACATTTACACACCGCTAGGGGAAGATTTTTTGGCAAGAAATGTG
TAATCCCTGTATGATTTTTAAACAGAAAAATAGACTGCTAACCCCAAGCAGGATGTCAAA
ACACCTTTAGAGTACATTAGAATCCAACAAATAACACATAAATGTTAACTAGAGCCCTCT
CTCAGAATATCACTGTAATTTGCAGTCATTAATAAATTAAATTGTTCTGAGCATATGTAA
TGTATAAATATAATAATTTGCTTTATCAACCTGCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTAAATACTTATTCCAAATTTAAAATGAGACCAAATCTAAAATATTTGGTCTAAAACGA
GGTCATACTCCAAAATTCACCAAAAATGTCCAAAAACTGTCATTATTTCTCTGTCTTCCT
GAGATTATTGGTGTACTTTTAGAAGTTGGCAGGGAAGCAGTGTCATATTACATGAAAAAT
TTACTACCTCAAAGTGTAAAAGACTTTTCCATTTGTGTCTTGACAGTGGAGTCTAATTAT
ATTTAAGGATTTCCACTAAGGGTTATAGTTTAATTTAGTGGTATATATTTGAACTATATA
CTGGTCAGAGGCTTTTGCAACAGTTGTGACAGCTGCTGAAAAAATGGATGCAAGTTCTGT
AACCTCAGAAGAAAGGAATGAAATTATCCATGCACGGTTTATTAGAGCCGTTTCTGAACT
AGAACTTTTAGGATTTATCAAACCCACCAAACAGAAGACTGACCATGTGGCAAGGTTAAC
GTGGGGAGGCTGTTAGAAAGCAAATGAATGAAGCCAGAAAGATAACATTTAGATTAAGAG
AAAAAGGGGACCATTCACATTTACACACCGCTAGGGGAAGATTTTTTGGCAAGAAATGTG
TAATCCCTGTATGATTTTTAAACAGAAAAATAGACTGCTAACCCCAAGCAGGATGTCAAA
ACACCTTTAGAGTACATTAGAATCCAACAAATAACACATAAATGTTAACTAGAGCCCTCT
CTCAGAATATCACTGTAATTTGCAGTCATTAATAAATTAAATTGTTCTGAGCATATGTAA
TGTATAAATATAATAATTTGCTTTATCAACCTGCAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               425-544, + strand, RNAz p=0.509241

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               425-544, + strand, RNAz p=0.509241

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_012381, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_012381, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               2-298, gnl|bosTau2|chr9 (34532532-34532222)
               

               
               2-298, gnl|Hg17|chr6 (88432426-88433361)
               

               
               2-298, gnl|Mm7|chr4 (34710203-34709811)
               


               
               387-807, gnl|bosTau2|chr9 (34532131-34531721)
               

               
               387-807, gnl|Hg17|chr6 (88433450-88433876)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-298, gnl|bosTau2|chr9 (34532532-34532222)
               

               
               2-298, gnl|Hg17|chr6 (88432426-88433361)
               

               
               2-298, gnl|Mm7|chr4 (34710203-34709811)
               


               
               387-807, gnl|bosTau2|chr9 (34532131-34531721)
               

               
               387-807, gnl|Hg17|chr6 (88433450-88433876)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               rec (0.17307)
               

               
               eye (0.170503)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               eru (0.120048)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               eru (0.120048)

	2-298, gnl\|bosTau2\|chr9 (34532532-34532222)
	2-298, gnl\|Hg17\|chr6 (88432426-88433361)
	2-298, gnl\|Mm7\|chr4 (34710203-34709811)

	387-807, gnl\|bosTau2\|chr9 (34532131-34531721)
	387-807, gnl\|Hg17\|chr6 (88433450-88433876)

	rec (0.17307)
	eye (0.170503)
	kid (0.129735)
	thg (0.126791)
	bla (0.124347)
	eru (0.120048)