Non-Coding RNA Search

Ss1.1-uFN-UNL-P-FN-bc-f-04-0-UNL.s2.3

Sequence:


               
               TTAACCACTGCACCACGACGGGAATTCCTCAGAACTGAAATTTTTTACTCTAAGAATTCT
ACGTAACTACTACAGATTTCCATTCTGATGGCCTCTGAGCTTTCATGTGTTATATTTTGG
TGCCTGATTCCCTGTGTGTTTCTATCACCTTGTGGAGGCCCCAGATGGAGTCAGTATTTG
GAATGACACATAATCACTGGATCTACTTACTGTTTTCCTTCACCTTTCCCAGGTGCTCTG
GGTGAGAAAGTGGAAGGGTGATGTGTAAAATGTCTGACATTTCCTACAGTCACATGTGTC
ATATTTATATTCCTATTTTTAGTGTACTGTATAAAATAGTGTCATCTCCAAAGGTATCCC
CAGGAAAGTCATGTTGTGTAGGCTCTGGTTTTGTACTTAAATCCATTCTTTTGTTACAGT
AATGGCACAGTATTCACTGCTTCCTCTCTGTATTGAAGATCTGCTTTCTTGTAGCACTGC
CTGATTTCATGTAGAATTGGTTATGGGCTTGCATTCCTCTCTTCAGAAGAAACCATTTTC
AAAACCCTCCTAATTCTAGCCTGGGGATGCAGATGTCTTAACTGTTTTGTTAATAAAAAG
AAAAATGTATAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAACCACTGCACCACGACGGGAATTCCTCAGAACTGAAATTTTTTACTCTAAGAATTCT
ACGTAACTACTACAGATTTCCATTCTGATGGCCTCTGAGCTTTCATGTGTTATATTTTGG
TGCCTGATTCCCTGTGTGTTTCTATCACCTTGTGGAGGCCCCAGATGGAGTCAGTATTTG
GAATGACACATAATCACTGGATCTACTTACTGTTTTCCTTCACCTTTCCCAGGTGCTCTG
GGTGAGAAAGTGGAAGGGTGATGTGTAAAATGTCTGACATTTCCTACAGTCACATGTGTC
ATATTTATATTCCTATTTTTAGTGTACTGTATAAAATAGTGTCATCTCCAAAGGTATCCC
CAGGAAAGTCATGTTGTGTAGGCTCTGGTTTTGTACTTAAATCCATTCTTTTGTTACAGT
AATGGCACAGTATTCACTGCTTCCTCTCTGTATTGAAGATCTGCTTTCTTGTAGCACTGC
CTGATTTCATGTAGAATTGGTTATGGGCTTGCATTCCTCTCTTCAGAAGAAACCATTTTC
AAAACCCTCCTAATTCTAGCCTGGGGATGCAGATGTCTTAACTGTTTTGTTAATAAAAAG
AAAAATGTATAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               60-179, - strand, RNAz p=0.921859

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               60-179, - strand, RNAz p=0.921859

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               22-605, gnl|bosTau2|chr17 (28159894-28160477)
               

               
               22-605, gnl|Hg17|chr12 (120087948-120088543)
               

               
               22-605, gnl|Mm7|chr5 (121917949-121918489)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               22-605, gnl|bosTau2|chr17 (28159894-28160477)
               

               
               22-605, gnl|Hg17|chr12 (120087948-120088543)
               

               
               22-605, gnl|Mm7|chr5 (121917949-121918489)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fbs (0.175346)
               

               
               eru (0.120048)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               eru (0.120048)

	22-605, gnl\|bosTau2\|chr17 (28159894-28160477)
	22-605, gnl\|Hg17\|chr12 (120087948-120088543)
	22-605, gnl\|Mm7\|chr5 (121917949-121918489)