Non-Coding RNA Search

Ss1.1-uFN-UNL-P-FN-bd-f-11-0-UNL.s2.3

Sequence:


               
               TTTTTTTTTTTTGCTCTTTTCAGCAGCTTTATTGCTACAGCTCCCCCTCCAGGCCCACCC
GCTAGGTGCTGTCCACACAGCCACGGACGCAGTCACTCTAGGGCGTGCTCCTTGACCCAA
GAGAAGCCCCGTTACTGCGCGCCTTCAGTCGCCACCCCAGCCCCCAAGTGACCGTCCACT
CGGGTTCGCCAGTTCCACATCCAGGCAGTCACCAGCAGGTGGCCGTCCGGGACTGACTCC
CCGCTCTGCCCAAGGTGGTGGCTGGGTCACAGCTGAGCAGCGTTGCAAGCGAGAAGTCTT
TTATTTGTCCAAAGCGCTGTTACAGCCATTCACGTCCAGAGCTGTGGCCACAGGTCCCGC
CTTTGCTGAGCGCACCTCAGGGTGCAGCCCTGCAGGTGCCGAGGTGGCAGTACCATCCTG
CCTGCTTCAGGGCAGTGCCTGAGGCGGTGCCTGCCCTGCCTGGGCAGGCAGGGTCTCCCT
GGGATCCTGGTTCCGCTTCCTGGTGACTCAAGACATCAGGCGTGTTTCCCTGCTTCTGGG
TCACGTGTGGGTCCGGTCTTCACGTGGGTGGCTCGGTATTCTGGGCATCACGGGTTTATC
AGGTAGATGCGAGTCACCTTTAGTCAAAGGTAAGGTGCCACGTCCCTCTCGGGCAGATGC
GTCCAGCTGCCCTTGCCCTGCTCTCGCCACGGCTGGGCGAGGGCTTGTCCCTGGGTTCTA
GGCCACAGCCGTCTGTCCCCACGGCCAGAGCTTCAGTTTCCACATTCAGCCCCCGGCTGA
CTCCTTGGCCCACAGGGGAGGAGTGGGGGGACCCTGCCTGGCAGGTGACCTGTGCCCCTG
CCCCCAGAACTACCCGCAGCCCAAGGGGCAGAAGAAGAAGAAGATCGTCAAGTACGGCAT
GGGCGGCCTCATCCTCCTGCTGCTGGTGGCCGTCATCTGGTTCCCGCTGCTCTTCATGTC
CCTCGTGCGCTCCGTGGTCGGCGTCGTCAACCAGCCCATCGACGTCACCGTCACCCTCAA
GCTGGGCGGCTACGAGGTGAGCAGCCCCACCAGGGAGGCGGGGGGGCGGGCGCCCTCTCG
GACCAGGCGGGGCGTCTCACCGGGTCCCCTCCGCCAGCCGCTCTTCACCATGAGCGCCCA
GCAGCCGTCCATCGTGCCCTTCACGCAGCAGGCCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTGCTCTTTTCAGCAGCTTTATTGCTACAGCTCCCCCTCCAGGCCCACCC
GCTAGGTGCTGTCCACACAGCCACGGACGCAGTCACTCTAGGGCGTGCTCCTTGACCCAA
GAGAAGCCCCGTTACTGCGCGCCTTCAGTCGCCACCCCAGCCCCCAAGTGACCGTCCACT
CGGGTTCGCCAGTTCCACATCCAGGCAGTCACCAGCAGGTGGCCGTCCGGGACTGACTCC
CCGCTCTGCCCAAGGTGGTGGCTGGGTCACAGCTGAGCAGCGTTGCAAGCGAGAAGTCTT
TTATTTGTCCAAAGCGCTGTTACAGCCATTCACGTCCAGAGCTGTGGCCACAGGTCCCGC
CTTTGCTGAGCGCACCTCAGGGTGCAGCCCTGCAGGTGCCGAGGTGGCAGTACCATCCTG
CCTGCTTCAGGGCAGTGCCTGAGGCGGTGCCTGCCCTGCCTGGGCAGGCAGGGTCTCCCT
GGGATCCTGGTTCCGCTTCCTGGTGACTCAAGACATCAGGCGTGTTTCCCTGCTTCTGGG
TCACGTGTGGGTCCGGTCTTCACGTGGGTGGCTCGGTATTCTGGGCATCACGGGTTTATC
AGGTAGATGCGAGTCACCTTTAGTCAAAGGTAAGGTGCCACGTCCCTCTCGGGCAGATGC
GTCCAGCTGCCCTTGCCCTGCTCTCGCCACGGCTGGGCGAGGGCTTGTCCCTGGGTTCTA
GGCCACAGCCGTCTGTCCCCACGGCCAGAGCTTCAGTTTCCACATTCAGCCCCCGGCTGA
CTCCTTGGCCCACAGGGGAGGAGTGGGGGGACCCTGCCTGGCAGGTGACCTGTGCCCCTG
CCCCCAGAACTACCCGCAGCCCAAGGGGCAGAAGAAGAAGAAGATCGTCAAGTACGGCAT
GGGCGGCCTCATCCTCCTGCTGCTGGTGGCCGTCATCTGGTTCCCGCTGCTCTTCATGTC
CCTCGTGCGCTCCGTGGTCGGCGTCGTCAACCAGCCCATCGACGTCACCGTCACCCTCAA
GCTGGGCGGCTACGAGGTGAGCAGCCCCACCAGGGAGGCGGGGGGGCGGGCGCCCTCTCG
GACCAGGCGGGGCGTCTCACCGGGTCCCCTCCGCCAGCCGCTCTTCACCATGAGCGCCCA
GCAGCCGTCCATCGTGCCCTTCACGCAGCAGGCCTA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               816-1176, gnl|bosTau2|chr18 (12642554-12642931)
               

               
               816-1176, gnl|Hg17|chr16 (87311153-87310749)
               

               
               816-1176, gnl|Mm7|chr8 (121125710-121125358)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               816-1176, gnl|bosTau2|chr18 (12642554-12642931)
               

               
               816-1176, gnl|Hg17|chr16 (87311153-87310749)
               

               
               816-1176, gnl|Mm7|chr8 (121125710-121125358)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

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               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)

	816-1176, gnl\|bosTau2\|chr18 (12642554-12642931)
	816-1176, gnl\|Hg17\|chr16 (87311153-87310749)
	816-1176, gnl\|Mm7\|chr8 (121125710-121125358)

	nms (0.213858)
	fcc (0.197785)
	ton (0.1755)
	mcp (0.170648)
	pla (0.133672)
	nmm (0.132802)
	clu (0.119646)
	ebs (0.118301)