Ss1.1-uFN-UNL-P-FN-bg-d-12-0-UNL.s1.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGGGTCACTGGCTGTGCCTGGACCAAAGACAACCTCCTGGTCTCCTGCTCCAGTGATGG CTCTGTGGCGCTATGGGACCCGGAGTCGAGACAGAAACTTGGTCATTTCCTGGGTCATCA GAGTGCTGTGAGCGCCGTGGTGGCTGTGGAGGAACACGTGGTATCGGTGGGCCGAGATGG GACCTTGAAAGTTTGGGACCATCAGGGTGTGGAGATGACCAGTATCCCTGCTCACTCAGG ACCCATCAGCCACTGTGCAGCTGCTCTGGACCCCCGAGCAGCGGGCCAGCCAGGGTCAGA GCTTCTGGTGGTGACTGTTGGATTGGATGGGGCCACACGGCTGTGGCATCCACTCCTGGT GTTTCAGATACACACCCTTCTGGGACACAGTGGTCCAGTCAATGCAGCTGCTGTTTCAGA GACCTCAGGCCTCCTGCTGACTGCTTCAGAGGATGGTTCCATACGGCTCTGGCAGGTGCC TGAAGAAGCAGATGACACACATATACCCAGGAGTTCTGCTGCCATCACTGCTGTGGCCTG GGCCCCAGATGGTTCTGTAGCGGTGTCGGGAAATCAAGCTGGGGAACTAACACTGTGGCA GGAAGCTAAAGCTGTGGCCACAGCACAGGCTCCAGGCTGCATCAGTGCTCTGATCTGGTA CTCAGCACATACCTTGATTGTTGTCAGTGCTGATAAAAAAGTCAGCGAGTGGCAAGTGGA ACTGCAGAAGGGCTCAGCACCCAGAAATTGCAGTTTTCACCTGAATCGAGTTCTGCAGGA AGACTTAGGGTTCCTGACAGGTGTAAGCCTGGCCCCTGACAGTCAGTCCCTCATGTTGGC CAAAGCAGATTTGCAAGTAATGCAAATGAAGCCAGGGGAAGATCCATCTAAAATCTGGGA AAGCTATTCAGAACATCCCATGATGTTGTCTACCCACCAGCACTATGGTGTGTTTTTCCT GCAGTCAATGAACCTTGGAATTCTTTCGAGGCAAAAGGAATCAGGAGAGTTTGAAAAGTG CCTGGAATTTGATCTGAACTTAGAGAATCCTAATAAGACCCTCATATCAGTAACTCAGGC CAAACCTGAATCTGAGTCCTCATTTTTGTGTGCCAGCTCCGATGGGATGCTGTGGAACCT AGCCAAATGCACTGATGAAGGAGAATGGACCACAGAGAATATCTGGGAGAAAAAAGAAAT GCCTGAACCCCAAACTCCAGGTTCAGACTCATCTGTGTGTTCTGAGTTTGGGTTTGCCTG GCAAACAACTCCACAACTAAAGACACGGCAGCGTAAAAAGGTTCACACGAGCTCTGTCAC AGCCCTCCATGTGTTGCCTGGGTTGCTGGTGACAGCTTCAAAGGACAGAGATGTTAAACT GTGGGAGAGACCCAGTATGCAGCTGCTGGGCCTGTTCCGATGCGAAGGGCCAGTGAGCTG CCTGGAACCCTGGCTGGGTCCTAACTCTACCCTGCACCTTGCAGTGGGAGATACCCAGGG CAATGTGTACTTTCTGTCCTGGGAATGAAGATGTGCTACTCAGGACAAAGAGACCACTTG TGCTGGAGATGGAAAGCCTGAAGATACCAGTGGCTACTTTCTTGATACAGTTATATCAAT AAAGTATCAGAAAATCTCAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGGGTCACTGGCTGTGCCTGGACCAAAGACAACCTCCTGGTCTCCTGCTCCAGTGATGG CTCTGTGGCGCTATGGGACCCGGAGTCGAGACAGAAACTTGGTCATTTCCTGGGTCATCA GAGTGCTGTGAGCGCCGTGGTGGCTGTGGAGGAACACGTGGTATCGGTGGGCCGAGATGG GACCTTGAAAGTTTGGGACCATCAGGGTGTGGAGATGACCAGTATCCCTGCTCACTCAGG ACCCATCAGCCACTGTGCAGCTGCTCTGGACCCCCGAGCAGCGGGCCAGCCAGGGTCAGA GCTTCTGGTGGTGACTGTTGGATTGGATGGGGCCACACGGCTGTGGCATCCACTCCTGGT GTTTCAGATACACACCCTTCTGGGACACAGTGGTCCAGTCAATGCAGCTGCTGTTTCAGA GACCTCAGGCCTCCTGCTGACTGCTTCAGAGGATGGTTCCATACGGCTCTGGCAGGTGCC TGAAGAAGCAGATGACACACATATACCCAGGAGTTCTGCTGCCATCACTGCTGTGGCCTG GGCCCCAGATGGTTCTGTAGCGGTGTCGGGAAATCAAGCTGGGGAACTAACACTGTGGCA GGAAGCTAAAGCTGTGGCCACAGCACAGGCTCCAGGCTGCATCAGTGCTCTGATCTGGTA CTCAGCACATACCTTGATTGTTGTCAGTGCTGATAAAAAAGTCAGCGAGTGGCAAGTGGA ACTGCAGAAGGGCTCAGCACCCAGAAATTGCAGTTTTCACCTGAATCGAGTTCTGCAGGA AGACTTAGGGTTCCTGACAGGTGTAAGCCTGGCCCCTGACAGTCAGTCCCTCATGTTGGC CAAAGCAGATTTGCAAGTAATGCAAATGAAGCCAGGGGAAGATCCATCTAAAATCTGGGA AAGCTATTCAGAACATCCCATGATGTTGTCTACCCACCAGCACTATGGTGTGTTTTTCCT GCAGTCAATGAACCTTGGAATTCTTTCGAGGCAAAAGGAATCAGGAGAGTTTGAAAAGTG CCTGGAATTTGATCTGAACTTAGAGAATCCTAATAAGACCCTCATATCAGTAACTCAGGC CAAACCTGAATCTGAGTCCTCATTTTTGTGTGCCAGCTCCGATGGGATGCTGTGGAACCT AGCCAAATGCACTGATGAAGGAGAATGGACCACAGAGAATATCTGGGAGAAAAAAGAAAT GCCTGAACCCCAAACTCCAGGTTCAGACTCATCTGTGTGTTCTGAGTTTGGGTTTGCCTG GCAAACAACTCCACAACTAAAGACACGGCAGCGTAAAAAGGTTCACACGAGCTCTGTCAC AGCCCTCCATGTGTTGCCTGGGTTGCTGGTGACAGCTTCAAAGGACAGAGATGTTAAACT GTGGGAGAGACCCAGTATGCAGCTGCTGGGCCTGTTCCGATGCGAAGGGCCAGTGAGCTG CCTGGAACCCTGGCTGGGTCCTAACTCTACCCTGCACCTTGCAGTGGGAGATACCCAGGG CAATGTGTACTTTCTGTCCTGGGAATGAAGATGTGCTACTCAGGACAAAGAGACCACTTG TGCTGGAGATGGAAAGCCTGAAGATACCAGTGGCTACTTTCTTGATACAGTTATATCAAT AAAGTATCAGAAAATCTCAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 148-281, + strand, RNAz p=0.890563 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 148-281, + strand, RNAz p=0.890563 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 148-281, gnl|bosTau2|chr10 (16447243-16447376) | |
| 148-281, gnl|Hg17|chr14 (19911810-19911677) | |
| 148-281, gnl|Mm7|chr14 (46164160-46164027) | |
| 489-629, gnl|bosTau2|chr10 (16447916-16448056) | |
| 489-629, gnl|canFam2|chr15 (20725598-20725849) | |
| 489-629, gnl|dasNov1|scaffold_137528 (4456-4166) | |
| 489-629, gnl|echTel1|scaffold_318614 (68838-68557) | |
| 489-629, gnl|hg17|chr14 (19910887-19911180) | |
| 489-629, gnl|Hg17|chr14 (19911149-19911009) | |
| 489-629, gnl|loxAfr1|scaffold_12444 (13191-12887) | |
| 489-629, gnl|mm7|chr14 (46162956-46163235) | |
| 489-629, gnl|Mm7|chr14 (46163204-46163064) | |
| 489-629, gnl|monDom2|scaffold_12 (30505427-30505731) | |
| 489-629, gnl|oryCun1|scaffold_191926 (3715-4013) | |
| 489-629, gnl|panTro1|chrUn_random (21243052-21243345) | |
| 489-629, gnl|rheMac2|chr7 (83078733-83079021) | |
| 489-629, gnl|rn3|chr15 (26824472-26824753) | |
| 746-901, gnl|bosTau2|chr10 (16449615-16449770) | |
| 746-901, gnl|canFam2|chr15 (20723757-20724275) | |
| 746-901, gnl|dasNov1|scaffold_122202 (1036-1560) | |
| 746-901, gnl|echTel1|scaffold_318614 (70641-70153) | |
| 746-901, gnl|hg17|chr14 (19909191-19909733) | |
| 746-901, gnl|Hg17|chr14 (19909637-19909484) | |
| 746-901, gnl|mm7|chr14 (46160686-46161191) | |
| 746-901, gnl|Mm7|chr14 (46161104-46160949) | |
| 746-901, gnl|monDom2|scaffold_12 (30504611-30505163) | |
| 746-901, gnl|oryCun1|scaffold_210637 (91297-91796) | |
| 746-901, gnl|panTro1|chrUn_random (21241383-21241925) | |
| 746-901, gnl|rheMac2|chr7 (83077096-83077638) | |
| 746-901, gnl|rn3|chr15 (26821252-26821787) | |
| 1094-1302, gnl|bosTau2|chr10 (16451273-16451481) | |
| 1094-1302, gnl|Hg17|chr14 (19907576-19907341) | |
| 1094-1302, gnl|Mm7|chr14 (46158847-46158627) | |
| 1405-1639, gnl|bosTau2|chr10 (16451940-16452173) | |
| 1405-1639, gnl|Hg17|chr14 (19906559-19906305) | |
| 1405-1639, gnl|Mm7|chr14 (46158188-46157958) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 148-281, gnl|bosTau2|chr10 (16447243-16447376) | |
| 148-281, gnl|Hg17|chr14 (19911810-19911677) | |
| 148-281, gnl|Mm7|chr14 (46164160-46164027) | |
| 489-629, gnl|bosTau2|chr10 (16447916-16448056) | |
| 489-629, gnl|canFam2|chr15 (20725598-20725849) | |
| 489-629, gnl|dasNov1|scaffold_137528 (4456-4166) | |
| 489-629, gnl|echTel1|scaffold_318614 (68838-68557) | |
| 489-629, gnl|hg17|chr14 (19910887-19911180) | |
| 489-629, gnl|Hg17|chr14 (19911149-19911009) | |
| 489-629, gnl|loxAfr1|scaffold_12444 (13191-12887) | |
| 489-629, gnl|mm7|chr14 (46162956-46163235) | |
| 489-629, gnl|Mm7|chr14 (46163204-46163064) | |
| 489-629, gnl|monDom2|scaffold_12 (30505427-30505731) | |
| 489-629, gnl|oryCun1|scaffold_191926 (3715-4013) | |
| 489-629, gnl|panTro1|chrUn_random (21243052-21243345) | |
| 489-629, gnl|rheMac2|chr7 (83078733-83079021) | |
| 489-629, gnl|rn3|chr15 (26824472-26824753) | |
| 746-901, gnl|bosTau2|chr10 (16449615-16449770) | |
| 746-901, gnl|canFam2|chr15 (20723757-20724275) | |
| 746-901, gnl|dasNov1|scaffold_122202 (1036-1560) | |
| 746-901, gnl|echTel1|scaffold_318614 (70641-70153) | |
| 746-901, gnl|hg17|chr14 (19909191-19909733) | |
| 746-901, gnl|Hg17|chr14 (19909637-19909484) | |
| 746-901, gnl|mm7|chr14 (46160686-46161191) | |
| 746-901, gnl|Mm7|chr14 (46161104-46160949) | |
| 746-901, gnl|monDom2|scaffold_12 (30504611-30505163) | |
| 746-901, gnl|oryCun1|scaffold_210637 (91297-91796) | |
| 746-901, gnl|panTro1|chrUn_random (21241383-21241925) | |
| 746-901, gnl|rheMac2|chr7 (83077096-83077638) | |
| 746-901, gnl|rn3|chr15 (26821252-26821787) | |
| 1094-1302, gnl|bosTau2|chr10 (16451273-16451481) | |
| 1094-1302, gnl|Hg17|chr14 (19907576-19907341) | |
| 1094-1302, gnl|Mm7|chr14 (46158847-46158627) | |
| 1405-1639, gnl|bosTau2|chr10 (16451940-16452173) | |
| 1405-1639, gnl|Hg17|chr14 (19906559-19906305) | |
| 1405-1639, gnl|Mm7|chr14 (46158188-46157958) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| elu (0.385356) | |
| cly (0.241284) | |
| col (0.195008) | |
| nep (0.183925) | |
| duo (0.172801) | |
| cje (0.165235) | |
| cag (0.151194) | |
| ute (0.132784) | |
| ret (0.128733) | |
| med (0.116252) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| cly (0.241284) | |
| col (0.195008) | |
| nep (0.183925) | |
| duo (0.172801) | |
| cje (0.165235) | |
| cag (0.151194) | |
| ute (0.132784) | |
| ret (0.128733) | |
| med (0.116252) |