Non-Coding RNA Search

Ss1.1-uFN-UNL-P-FN-bh-a-05-0-UNL.s1.3

Sequence:


               
               CTGATGTGAGTGTGGCTGCCTGTGCCCTGGAGCACTGTCTGCCCTAAGCTGCAGGGGGGC
TGGGCATCCCTGGGCCCCAGGAGATGCAGGGTTGCCCAGCACCCTCACAGCTCTGAATTC
GCTTCTGTTATTTATGGCTTTGTGCTGCTTCTTGGTACCCCAATTCTTGTCTGTGTCCTT
CCAACCCCAGGCTGCTGAAGTGGCCCAGCCCCAATGCTGTCAACTCGGCTTGACACCCCT
CAGCGGCTGTGCTCTTCTGGGAGATTCCCCCTCGCTGCCTTAGCCTTGAAGCAGCAGCTC
TCCTTCTTGCTGCCATCAGAGCCTGAGAGCAGGCTGAGGGGGTCGGCACAGTCCCTCTCA
GAGAGCTCGCCCAGCCTGGCTTGCAGAGGGCCCTTGGTCACCTTGCCCCTCCTTCCTGTC
TTCTCTGATTCTTTCCCCGCAAAATAGCCCTGGAGAGCTCATTGTCACGCTGGCTCATCC
TCTCTGTGTTGGTGGGAGAAATTTTTGCAGCACACCTCCGTTTGGAACCCGGGAGAGCAG
GAGATGCAGCCAAGGCAGGCAGGCACCGAGAGGCAGACCCCCTTCAGCAGGAGCTGTGCG
TCCTTGTTCTGCTGCTGTTCTGCCTTTCCTGATAAGTGGGGTTGGGGGCACACAGACATT
GGAATATTTGTACTCTTGCTCCTGTGCCATTAGAGAGGCTGCTGCTGCCCTGGGCAGGCC
AGCCCCTCCTCCTCTCGGCTACACTCATGTGTCAGACTATATTTCAAATAAAAAAATCTT
CTTACCAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGATGTGAGTGTGGCTGCCTGTGCCCTGGAGCACTGTCTGCCCTAAGCTGCAGGGGGGC
TGGGCATCCCTGGGCCCCAGGAGATGCAGGGTTGCCCAGCACCCTCACAGCTCTGAATTC
GCTTCTGTTATTTATGGCTTTGTGCTGCTTCTTGGTACCCCAATTCTTGTCTGTGTCCTT
CCAACCCCAGGCTGCTGAAGTGGCCCAGCCCCAATGCTGTCAACTCGGCTTGACACCCCT
CAGCGGCTGTGCTCTTCTGGGAGATTCCCCCTCGCTGCCTTAGCCTTGAAGCAGCAGCTC
TCCTTCTTGCTGCCATCAGAGCCTGAGAGCAGGCTGAGGGGGTCGGCACAGTCCCTCTCA
GAGAGCTCGCCCAGCCTGGCTTGCAGAGGGCCCTTGGTCACCTTGCCCCTCCTTCCTGTC
TTCTCTGATTCTTTCCCCGCAAAATAGCCCTGGAGAGCTCATTGTCACGCTGGCTCATCC
TCTCTGTGTTGGTGGGAGAAATTTTTGCAGCACACCTCCGTTTGGAACCCGGGAGAGCAG
GAGATGCAGCCAAGGCAGGCAGGCACCGAGAGGCAGACCCCCTTCAGCAGGAGCTGTGCG
TCCTTGTTCTGCTGCTGTTCTGCCTTTCCTGATAAGTGGGGTTGGGGGCACACAGACATT
GGAATATTTGTACTCTTGCTCCTGTGCCATTAGAGAGGCTGCTGCTGCCCTGGGCAGGCC
AGCCCCTCCTCCTCTCGGCTACACTCATGTGTCAGACTATATTTCAAATAAAAAAATCTT
CTTACCAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               6-163, + strand, RNAz p=0.999615

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               6-163, + strand, RNAz p=0.999615

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               15-139, + strand, RNAmicro p=1
               

               
               41-173, - strand, RNAmicro p=0.996747

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               15-139, + strand, RNAmicro p=1
               

               
               41-173, - strand, RNAmicro p=0.996747

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-507, gnl|bosTau2|chr21 (12816608-12817081)
               

               
               6-507, gnl|Hg17|chr15 (83146723-83147269)
               

               
               6-507, gnl|Mm7|chr7 (76913391-76913898)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-507, gnl|bosTau2|chr21 (12816608-12817081)
               

               
               6-507, gnl|Hg17|chr15 (83146723-83147269)
               

               
               6-507, gnl|Mm7|chr7 (76913391-76913898)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fty (0.17584)
               

               
               hlv (0.139256)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               hlv (0.139256)

	15-139, + strand, RNAmicro p=1
	41-173, - strand, RNAmicro p=0.996747

	6-507, gnl\|bosTau2\|chr21 (12816608-12817081)
	6-507, gnl\|Hg17\|chr15 (83146723-83147269)
	6-507, gnl\|Mm7\|chr7 (76913391-76913898)