Non-Coding RNA Search

Ss1.1-uFN-UNL-P-FN-bi-f-02-0-UNL.s1.3

Sequence:


               
               GAAAAGGGGCAGAGTCAGTTCCAGGCCCTCTGCTTTGTCACCCGGCTGCAGCACAATGAG
ATCATTCCCAGTGAGGCCATGGCCAAGCTCCGACAGAAAAATCCACGGGCAGTGCGGCAG
GCCGAGGAGGTACGGGGCCTGGAGTATCTGCACATGGACATCGCTGTGAACTTCAGCCAG
GGGGGCCTGCTGAGCCCCCACCTCCGCAACGTGTGTGCCGAAGCCGCCGATGCCATCTAC
ACTCGCCAGGAGGATGTCCAGTTCTGGCTGGAGCAAGGTGTGGACAGCTCTGTGTTTGAA
GCTCTGCCCCAGGCCTCAGAGCAGGTGTCGCTGCCTCGCTGTGGACAGGTTGGGGACCGT
GGGAAGCCCTGCCTCTGCCACTATGGCCTGAGCCTGGCCTGGTACCCCTGCATGCTCAAG
TACTGCCACAGCCGTGACCGCCCAGCACCCTACAAGTGTGGCATCCGCAGCTGTCAGAAG
AGCTACAGCTTCAGCTTCTCCGTGCCCCAGAGGCAGTTGTGCCTCTGGGATGAGGACCCC
TAGCTGGGCTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAAGGGGCAGAGTCAGTTCCAGGCCCTCTGCTTTGTCACCCGGCTGCAGCACAATGAG
ATCATTCCCAGTGAGGCCATGGCCAAGCTCCGACAGAAAAATCCACGGGCAGTGCGGCAG
GCCGAGGAGGTACGGGGCCTGGAGTATCTGCACATGGACATCGCTGTGAACTTCAGCCAG
GGGGGCCTGCTGAGCCCCCACCTCCGCAACGTGTGTGCCGAAGCCGCCGATGCCATCTAC
ACTCGCCAGGAGGATGTCCAGTTCTGGCTGGAGCAAGGTGTGGACAGCTCTGTGTTTGAA
GCTCTGCCCCAGGCCTCAGAGCAGGTGTCGCTGCCTCGCTGTGGACAGGTTGGGGACCGT
GGGAAGCCCTGCCTCTGCCACTATGGCCTGAGCCTGGCCTGGTACCCCTGCATGCTCAAG
TACTGCCACAGCCGTGACCGCCCAGCACCCTACAAGTGTGGCATCCGCAGCTGTCAGAAG
AGCTACAGCTTCAGCTTCTCCGTGCCCCAGAGGCAGTTGTGCCTCTGGGATGAGGACCCC
TAGCTGGGCTGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61809205|ref|XP_592427.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61809205|ref|XP_592427.1|

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

Help | Less info


               
               276-552, gnl|bosTau2|chr15 (15709690-15709414)
               

               
               276-552, gnl|canFam2|chr5 (16779323-16779024)
               

               
               276-552, gnl|danRer3|chrNA (238839884-238839588)
               

               
               276-552, gnl|fr1|chrUn (210639985-210640273)
               

               
               276-552, gnl|galGal2|chr24 (3726552-3726250)
               

               
               276-552, gnl|hg17|chr11 (119604775-119605073)
               

               
               276-552, gnl|Hg17|chr11 (119604785-119605061)
               

               
               276-552, gnl|mm7|chr9 (43157660-43157366)
               

               
               276-552, gnl|Mm7|chr9 (43157649-43157374)
               

               
               276-552, gnl|monDom2|scaffold_2 (117523238-117522929)
               

               
               276-552, gnl|panTro1|chr9 (121628033-121628331)
               

               
               276-552, gnl|rheMac2|chr14 (118638314-118638612)
               

               
               276-552, gnl|rn3|chr8 (46234586-46234287)
               

               
               276-552, gnl|tetNig1|chr16 (776158-775870)
               

               
               276-552, gnl|xenTro1|scaffold_75 (1916081-1916377)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               276-552, gnl|bosTau2|chr15 (15709690-15709414)
               

               
               276-552, gnl|canFam2|chr5 (16779323-16779024)
               

               
               276-552, gnl|danRer3|chrNA (238839884-238839588)
               

               
               276-552, gnl|fr1|chrUn (210639985-210640273)
               

               
               276-552, gnl|galGal2|chr24 (3726552-3726250)
               

               
               276-552, gnl|hg17|chr11 (119604775-119605073)
               

               
               276-552, gnl|Hg17|chr11 (119604785-119605061)
               

               
               276-552, gnl|mm7|chr9 (43157660-43157366)
               

               
               276-552, gnl|Mm7|chr9 (43157649-43157374)
               

               
               276-552, gnl|monDom2|scaffold_2 (117523238-117522929)
               

               
               276-552, gnl|panTro1|chr9 (121628033-121628331)
               

               
               276-552, gnl|rheMac2|chr14 (118638314-118638612)
               

               
               276-552, gnl|rn3|chr8 (46234586-46234287)
               

               
               276-552, gnl|tetNig1|chr16 (776158-775870)
               

               
               276-552, gnl|xenTro1|scaffold_75 (1916081-1916377)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               jej (0.0989218)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.0989218)

	276-552, gnl\|bosTau2\|chr15 (15709690-15709414)
	276-552, gnl\|canFam2\|chr5 (16779323-16779024)
	276-552, gnl\|danRer3\|chrNA (238839884-238839588)
	276-552, gnl\|fr1\|chrUn (210639985-210640273)
	276-552, gnl\|galGal2\|chr24 (3726552-3726250)
	276-552, gnl\|hg17\|chr11 (119604775-119605073)
	276-552, gnl\|Hg17\|chr11 (119604785-119605061)
	276-552, gnl\|mm7\|chr9 (43157660-43157366)
	276-552, gnl\|Mm7\|chr9 (43157649-43157374)
	276-552, gnl\|monDom2\|scaffold_2 (117523238-117522929)
	276-552, gnl\|panTro1\|chr9 (121628033-121628331)
	276-552, gnl\|rheMac2\|chr14 (118638314-118638612)
	276-552, gnl\|rn3\|chr8 (46234586-46234287)
	276-552, gnl\|tetNig1\|chr16 (776158-775870)
	276-552, gnl\|xenTro1\|scaffold_75 (1916081-1916377)