Non-Coding RNA Search

Ss1.1-uFN-UNL-P-FN-bi-g-02-0-UNL.s1.3

Sequence:


               
               CGCCGATCCGCGGTAGGCGCGAGAACGCGCCGGGCAGCGCCGGTCTGGGCATGAAGCTGG
GCCGGGCCGCGCTGGGCCTGCTGCTGCTGGCGCCGTTGGCGGTGCGGGCGGTAGAGCCCA
TCAGTCTGGGACTGGCCCTGGCCGGCGTCCTCACCGGCTACATCTCCTACCCGCGCCTCT
TCTGCTTCTTCACCGAGTGCTGCAGCCAGAAGGGGAGCCTCAGCCGGGAGGCGCTGCAGA
AGGATCTGGACAGCAAGCTTTTCGGACAGCATCTTGCAAAGAAAGTCATCTTAAATGCCG
TCTCAGGCTTCATCAGCAACCCGAAGCCCAAGAAGCCGCTCACCCTCTCCCTACACGGGT
GGACGGGCACCGGCAAAAATTTTGTCAGCAAGATCATCGCAGAGAATATTTACGAGGGTG
GTCTGAACAGTGACTATGTCCACCTGTTTGTGGCCACACTGCACTTCCCCCACATCTCCA
ACATCACCCTGTACAAGGATCAGTTACAGTCGTGGATCCGCGGCAACGTGAGTGCCTGTG
CCAGGTCCATCTTCATATTTGACGAAATGGATAAGATGCACGCTGGCCTCATAGACGCCA
TCAAGCCCTACCTGGACTATTACGACAACCTGGACGGGGTCTCCTATCAGAAAGCCATCT
TCATTTTTCTCAGCAATGCTGGCGCCGAGAGGATCACAGACGTGGCTTTAGATTTCTGGA
GAAGTGGGAAGCAGCGGGAAGAAATCAGACTGAGAGACATGGAGCACGCGCTGTCTGTGT
CGGCCTTCAACAACAAGAACAGTGGCTTCTGGCACAGCAGCTTAATTGACCGAAATCTCA
TTGATTATTTTGTTCCCTTCCTGCCCCTGGAATACAAACACCTAAAAATGTGCATCAGAG
TCGAAATGCAGTCCCGAGGCTACGAGATTGACGAGGACATTGTGAGCAAAGTGGCCGAGG
AGATGACGTTTTTCCCCAAAGAGGAGAGAGTTTTCTCGGACAAAGGCTGCAAAACTGTGT
TCACCAAGTTGGATTATTACTACGATGATTGATGGATTGCTGGCGCCTGAGTGGTGCTTC
CCATCGGCGAAGAAGGAACTCGGCTCTCGGATCTCCCCCCGCCTCCCGCTCCGCTGCCCC
GGGAAGAGGAGTGAAATGAATTCTCCCCGAGTGACGGGACAGGAGCTCTCGCCCAGCAGG
GCCTGCGGGCCCCACACCTGCCAGATCACAGAGGGAAACAGCTCCCGGAGCCCGCGGGAG
AGGGAGGAGCCAGCGCCCGGCCCACCCGTGCCAGGGCTCATGATTTTCTCAAAAATCATG
TTTTAATTTCAAGTGTTTCTGTTTCAAGGAAGGCTGTTTTACTGAAAAAATGTGCTAATT
TTATTTAAGATGGTTTTTAACATTACGAGAAACTTCAGACTCCCGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCCGATCCGCGGTAGGCGCGAGAACGCGCCGGGCAGCGCCGGTCTGGGCATGAAGCTGG
GCCGGGCCGCGCTGGGCCTGCTGCTGCTGGCGCCGTTGGCGGTGCGGGCGGTAGAGCCCA
TCAGTCTGGGACTGGCCCTGGCCGGCGTCCTCACCGGCTACATCTCCTACCCGCGCCTCT
TCTGCTTCTTCACCGAGTGCTGCAGCCAGAAGGGGAGCCTCAGCCGGGAGGCGCTGCAGA
AGGATCTGGACAGCAAGCTTTTCGGACAGCATCTTGCAAAGAAAGTCATCTTAAATGCCG
TCTCAGGCTTCATCAGCAACCCGAAGCCCAAGAAGCCGCTCACCCTCTCCCTACACGGGT
GGACGGGCACCGGCAAAAATTTTGTCAGCAAGATCATCGCAGAGAATATTTACGAGGGTG
GTCTGAACAGTGACTATGTCCACCTGTTTGTGGCCACACTGCACTTCCCCCACATCTCCA
ACATCACCCTGTACAAGGATCAGTTACAGTCGTGGATCCGCGGCAACGTGAGTGCCTGTG
CCAGGTCCATCTTCATATTTGACGAAATGGATAAGATGCACGCTGGCCTCATAGACGCCA
TCAAGCCCTACCTGGACTATTACGACAACCTGGACGGGGTCTCCTATCAGAAAGCCATCT
TCATTTTTCTCAGCAATGCTGGCGCCGAGAGGATCACAGACGTGGCTTTAGATTTCTGGA
GAAGTGGGAAGCAGCGGGAAGAAATCAGACTGAGAGACATGGAGCACGCGCTGTCTGTGT
CGGCCTTCAACAACAAGAACAGTGGCTTCTGGCACAGCAGCTTAATTGACCGAAATCTCA
TTGATTATTTTGTTCCCTTCCTGCCCCTGGAATACAAACACCTAAAAATGTGCATCAGAG
TCGAAATGCAGTCCCGAGGCTACGAGATTGACGAGGACATTGTGAGCAAAGTGGCCGAGG
AGATGACGTTTTTCCCCAAAGAGGAGAGAGTTTTCTCGGACAAAGGCTGCAAAACTGTGT
TCACCAAGTTGGATTATTACTACGATGATTGATGGATTGCTGGCGCCTGAGTGGTGCTTC
CCATCGGCGAAGAAGGAACTCGGCTCTCGGATCTCCCCCCGCCTCCCGCTCCGCTGCCCC
GGGAAGAGGAGTGAAATGAATTCTCCCCGAGTGACGGGACAGGAGCTCTCGCCCAGCAGG
GCCTGCGGGCCCCACACCTGCCAGATCACAGAGGGAAACAGCTCCCGGAGCCCGCGGGAG
AGGGAGGAGCCAGCGCCCGGCCCACCCGTGCCAGGGCTCATGATTTTCTCAAAAATCATG
TTTTAATTTCAAGTGTTTCTGTTTCAAGGAAGGCTGTTTTACTGAAAAAATGTGCTAATT
TTATTTAAGATGGTTTTTAACATTACGAGAAACTTCAGACTCCCGAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61868576|ref|XP_613183.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61868576|ref|XP_613183.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               271-390, + strand, RNAz p=0.600928
               

               
               922-1041, + strand, RNAz p=0.658003

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               271-390, + strand, RNAz p=0.600928
               

               
               922-1041, + strand, RNAz p=0.658003

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-229, gnl|bosTau2|chr11 (80396594-80396366)
               

               
               1-229, gnl|Hg17|chr9 (129665968-129665743)
               

               
               1-229, gnl|Mm7|chr2 (30975225-30974987)
               


               
               231-498, gnl|bosTau2|chr11 (80395760-80395493)
               

               
               231-498, gnl|Hg17|chr9 (129664680-129664413)
               

               
               231-498, gnl|Mm7|chr2 (30974667-30974400)
               


               
               802-1055, gnl|bosTau2|chr11 (80389283-80389030)
               

               
               802-1055, gnl|Hg17|chr9 (129656055-129655802)
               

               
               802-1055, gnl|Mm7|chr2 (30968508-30968255)
               


               
               1219-1422, gnl|bosTau2|chr11 (80388898-80388682)
               

               
               1219-1422, gnl|Hg17|chr9 (129655620-129655415)
               

               
               1219-1422, gnl|Mm7|chr2 (30968135-30967939)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-229, gnl|bosTau2|chr11 (80396594-80396366)
               

               
               1-229, gnl|Hg17|chr9 (129665968-129665743)
               

               
               1-229, gnl|Mm7|chr2 (30975225-30974987)
               


               
               231-498, gnl|bosTau2|chr11 (80395760-80395493)
               

               
               231-498, gnl|Hg17|chr9 (129664680-129664413)
               

               
               231-498, gnl|Mm7|chr2 (30974667-30974400)
               


               
               802-1055, gnl|bosTau2|chr11 (80389283-80389030)
               

               
               802-1055, gnl|Hg17|chr9 (129656055-129655802)
               

               
               802-1055, gnl|Mm7|chr2 (30968508-30968255)
               


               
               1219-1422, gnl|bosTau2|chr11 (80388898-80388682)
               

               
               1219-1422, gnl|Hg17|chr9 (129655620-129655415)
               

               
               1219-1422, gnl|Mm7|chr2 (30968135-30967939)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

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               col (0.195008)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)

	271-390, + strand, RNAz p=0.600928
	922-1041, + strand, RNAz p=0.658003

	1-229, gnl\|bosTau2\|chr11 (80396594-80396366)
	1-229, gnl\|Hg17\|chr9 (129665968-129665743)
	1-229, gnl\|Mm7\|chr2 (30975225-30974987)

	231-498, gnl\|bosTau2\|chr11 (80395760-80395493)
	231-498, gnl\|Hg17\|chr9 (129664680-129664413)
	231-498, gnl\|Mm7\|chr2 (30974667-30974400)

	802-1055, gnl\|bosTau2\|chr11 (80389283-80389030)
	802-1055, gnl\|Hg17\|chr9 (129656055-129655802)
	802-1055, gnl\|Mm7\|chr2 (30968508-30968255)

	1219-1422, gnl\|bosTau2\|chr11 (80388898-80388682)
	1219-1422, gnl\|Hg17\|chr9 (129655620-129655415)
	1219-1422, gnl\|Mm7\|chr2 (30968135-30967939)

	col (0.195008)
	mcp (0.170648)
	nje (0.16592)
	cje (0.165235)
	cki (0.165235)
	cli (0.152812)
	cag (0.151194)
	che (0.136314)
	ssp (0.13552)
	pgl (0.118483)
	ebs (0.118301)
	med (0.116252)
	nbm (0.0993246)