Ss1.1-uFN-UNL-P-FN-bi-h-12-0-UNL.s1.3
|
GCTCTCTAGATAGCTGTGTTTAGAAGGATTCTGAGGCTTCAGCCTCACTCAGGGGAAAGA
CTGTTGCAACTGTTTTTTTTTTTTTTGCAGTTTCAACGTTTATTTCTGATACCAAAACCT
GACAGCACACAAGGGGGAAAAAAGCAATAGACAAGGAACAGCAAATAAATTTATCTTGCA
TGCCACTTTCAGTCAACAGGATGTGGCTCTCTAGATAGCTGTGTTTAGAAGGATTCTGAG
GCTTCAGCCTCACTCAGGGGAAAGACTGTTGCAACTGATTAGCAATACCCAACATCTCAC
TCAACCCAGAAGAAACCAATGGCACCAAAGTTGGCAGCAAAGTTGGCACTGGCTGTACCA
CCAGGGCCAATAATGGGGCCAGCGAAGGTCTGAGGAAATCTGGAGCGAGCATTCTGGTGG
TATCTGGCCCAGAAGGTAAATGGGATTCTGGACCAGGGATCTCCAAAATCTCCTTCCTCA
TCCCAGGTCAGCAGCTCAAATTCAATGTCATCCCAGCTCCAGGGCCCAGATACGGCCTCA
TCTCCAATCCCCATGCGGGTTCTCGCCTCAGCCCGGGCCTCTGCCTCAGCTGCAGCAGCA
TCCAGAGCATCTAAGGCCTCATCTGCAGCCTCCATGAACTGTGCAGTCCAGTCACGAGGG
TCTCTCTTCTGAACCTCTGCAATGAATCTCAGCACTTTCATCTTGCTAGTCTCATGGTAG
GAACGGAGGCCCCAGAGGAACTCATACTCAGGAGGGTTGCTGTTGGGCACTCGTCTGTAG
TCTAGGTACTTTTGCTTTACAAACTCGTAAGTGAGAAGTTTCCTCAGATCACCAAGGAGG
GGATGTCTCACCCCAGGACGCAGTCCCATCTTGCGTAGTGCCTCCCAGAGGACAGCTTCA
CTGGCACGGTTGCCATTCATGAAGATGACACCCAAAATCACTAAGAGGAGACCCAGCTTG
GGTGTGTCTTTGGTCGTTCCCAGTATGCCAGCCAGGGACTCGGGGGTACTGATGAGAATA
TACAGGTGTTCTTCTTTGTCAATTTCCTTCAGTTGAATTCCAAATTTCTTCTCTAGGACA
AAACATGCGCGTTCAATGATTTCTGGATACACATCAGTGTATTCACGGATGATATCCCTC
AGCATTTCTGAGCGCTTGATGGGCACCTTTGTGTAATCTTTAAGCATCAGGTACTTGACC
AACTTGTTCGCTCTTTCCTGAAGAAGGGCCACATCTCGGGGCTGTGAGGCACCCAGGTTC
TGTGAGGCACGCGAGTTGGGAGAGGGGCGCAGGTTCGGTGAGGGGCGCAGGTTCTGCCAG
TCAGGTGGAACTGGCCAATCAGTGGGAATCCAGTCAGGTGGGAGCGGCCAGTCAGTGGGA
AGTGGCCAATCAGGTGGCAGTGGCCAGTCGGGGGGCAGTGGCCAGTCAGGAGGGCCTTGC
CAATCTGGAGGACCCTGCCAGCCTGGTGGAGTCTGCCATCCAGGTGGGGTCTGCCATCCA
GGTGGATTTTGCCAGGCCAGTGGGTTCGGCCAGACAACTGGACCAGGCCAGACAATGGGG
TTTGGCCAGATCACAGGATTCTGCCAGATCACTGGGTTTGGCCAGATCACTGGGTTCTGC
CAAGCAACTGGGTTTTGCCAGGCTGGTGGGGTCTGCCTAGCTGGGGGGCTCTGTCGTGCT
GGTGGGGTCTGCCTGGCTGGCTGATTTTGCCAGCCTGATGGGTTCTGCCAGGCCAATGGG
GTCTGCCAGAGAACATTGGGAGGTGCGCCAGGTGGGCTCTGAGTGGTAATTGGAACGGGT
GCAGACCTCCAGGTCCCTGGAGCCAGTGGGGCCCGCCTCTGATCCCCACTGCTGCTCTCT
TCCACATTCAAGTTATTAATCTTTCGGGTCCTCTTGCCCCGAATTATAGTCCTGGATTCC
AGATTCTGAGCCTGGGAGCCATCTGCTGATGTCTGTGCAGCTGCACCATCAGATTCACAG
ATACCTGGTCCTGGGTCAGCCTCTATGTCAGCCTGGGAAGTGGCCATCTTGGCCTGGTTA
ATATTCTGGGTCTGGGTTTCAGCTGTTGGGGCTTTAGTGGTATCATTCCAAGCCTTGAAG
GCTGTCTTAGGCTGAGTGTTGACCATCTCATTGGCATTGAGAGATGGAGAGAAATTGTAA
GTGGCATTTGGGCCCACCTTCGTAGTGGCATTCTGGGCCTTAAAGGCCATCTCAGGTTTG
GCAGTTAACTCACTGGTGGTTGCTGCCTGGGAAAAATCATAGGCAGCATTTGGGCCCTTT
GAGGGGGCATTTGGGGCCTTAAAGGCTACCGTAGGTGGTGTGCTGGGAATCTCCTTGGCA
TTAAGAGCCTGAGAGAAATCATAGGCAGCATTTGGGCCTTTTGTGGTGGCATTCTGGGCC
TTAAAGGCTGTCTTAGGCTTAGTGGCAGCTGCTAAAGCCTGAATATCAGCCACCTCATTG
GCAGATGGGGGCTGTGAACTCTGAGGACTAGCATTTGGCCCACTGGCAGCTGCTGTGGCC
TGGTTGGTAGGTGGAGCCTCCGAGATCTGGATGGCCTCCATCAGGGTCTGCATAAGCAAG
GTGCTGTCTTCTACAGAGGCCTCAGCCTGGAAGCCGAGGAGGCCCGCACCACAGTCCATT
TTCTGAGCCATGGTTCTTGTCCCTCTGGCAAGAGCAGAGCCTTGCCTCAGGCCCCAACCC
CAACCCCCTCGTTGCCTCCCTTCT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCTCTCTAGATAGCTGTGTTTAGAAGGATTCTGAGGCTTCAGCCTCACTCAGGGGAAAGA
CTGTTGCAACTGTTTTTTTTTTTTTTGCAGTTTCAACGTTTATTTCTGATACCAAAACCT
GACAGCACACAAGGGGGAAAAAAGCAATAGACAAGGAACAGCAAATAAATTTATCTTGCA
TGCCACTTTCAGTCAACAGGATGTGGCTCTCTAGATAGCTGTGTTTAGAAGGATTCTGAG
GCTTCAGCCTCACTCAGGGGAAAGACTGTTGCAACTGATTAGCAATACCCAACATCTCAC
TCAACCCAGAAGAAACCAATGGCACCAAAGTTGGCAGCAAAGTTGGCACTGGCTGTACCA
CCAGGGCCAATAATGGGGCCAGCGAAGGTCTGAGGAAATCTGGAGCGAGCATTCTGGTGG
TATCTGGCCCAGAAGGTAAATGGGATTCTGGACCAGGGATCTCCAAAATCTCCTTCCTCA
TCCCAGGTCAGCAGCTCAAATTCAATGTCATCCCAGCTCCAGGGCCCAGATACGGCCTCA
TCTCCAATCCCCATGCGGGTTCTCGCCTCAGCCCGGGCCTCTGCCTCAGCTGCAGCAGCA
TCCAGAGCATCTAAGGCCTCATCTGCAGCCTCCATGAACTGTGCAGTCCAGTCACGAGGG
TCTCTCTTCTGAACCTCTGCAATGAATCTCAGCACTTTCATCTTGCTAGTCTCATGGTAG
GAACGGAGGCCCCAGAGGAACTCATACTCAGGAGGGTTGCTGTTGGGCACTCGTCTGTAG
TCTAGGTACTTTTGCTTTACAAACTCGTAAGTGAGAAGTTTCCTCAGATCACCAAGGAGG
GGATGTCTCACCCCAGGACGCAGTCCCATCTTGCGTAGTGCCTCCCAGAGGACAGCTTCA
CTGGCACGGTTGCCATTCATGAAGATGACACCCAAAATCACTAAGAGGAGACCCAGCTTG
GGTGTGTCTTTGGTCGTTCCCAGTATGCCAGCCAGGGACTCGGGGGTACTGATGAGAATA
TACAGGTGTTCTTCTTTGTCAATTTCCTTCAGTTGAATTCCAAATTTCTTCTCTAGGACA
AAACATGCGCGTTCAATGATTTCTGGATACACATCAGTGTATTCACGGATGATATCCCTC
AGCATTTCTGAGCGCTTGATGGGCACCTTTGTGTAATCTTTAAGCATCAGGTACTTGACC
AACTTGTTCGCTCTTTCCTGAAGAAGGGCCACATCTCGGGGCTGTGAGGCACCCAGGTTC
TGTGAGGCACGCGAGTTGGGAGAGGGGCGCAGGTTCGGTGAGGGGCGCAGGTTCTGCCAG
TCAGGTGGAACTGGCCAATCAGTGGGAATCCAGTCAGGTGGGAGCGGCCAGTCAGTGGGA
AGTGGCCAATCAGGTGGCAGTGGCCAGTCGGGGGGCAGTGGCCAGTCAGGAGGGCCTTGC
CAATCTGGAGGACCCTGCCAGCCTGGTGGAGTCTGCCATCCAGGTGGGGTCTGCCATCCA
GGTGGATTTTGCCAGGCCAGTGGGTTCGGCCAGACAACTGGACCAGGCCAGACAATGGGG
TTTGGCCAGATCACAGGATTCTGCCAGATCACTGGGTTTGGCCAGATCACTGGGTTCTGC
CAAGCAACTGGGTTTTGCCAGGCTGGTGGGGTCTGCCTAGCTGGGGGGCTCTGTCGTGCT
GGTGGGGTCTGCCTGGCTGGCTGATTTTGCCAGCCTGATGGGTTCTGCCAGGCCAATGGG
GTCTGCCAGAGAACATTGGGAGGTGCGCCAGGTGGGCTCTGAGTGGTAATTGGAACGGGT
GCAGACCTCCAGGTCCCTGGAGCCAGTGGGGCCCGCCTCTGATCCCCACTGCTGCTCTCT
TCCACATTCAAGTTATTAATCTTTCGGGTCCTCTTGCCCCGAATTATAGTCCTGGATTCC
AGATTCTGAGCCTGGGAGCCATCTGCTGATGTCTGTGCAGCTGCACCATCAGATTCACAG
ATACCTGGTCCTGGGTCAGCCTCTATGTCAGCCTGGGAAGTGGCCATCTTGGCCTGGTTA
ATATTCTGGGTCTGGGTTTCAGCTGTTGGGGCTTTAGTGGTATCATTCCAAGCCTTGAAG
GCTGTCTTAGGCTGAGTGTTGACCATCTCATTGGCATTGAGAGATGGAGAGAAATTGTAA
GTGGCATTTGGGCCCACCTTCGTAGTGGCATTCTGGGCCTTAAAGGCCATCTCAGGTTTG
GCAGTTAACTCACTGGTGGTTGCTGCCTGGGAAAAATCATAGGCAGCATTTGGGCCCTTT
GAGGGGGCATTTGGGGCCTTAAAGGCTACCGTAGGTGGTGTGCTGGGAATCTCCTTGGCA
TTAAGAGCCTGAGAGAAATCATAGGCAGCATTTGGGCCTTTTGTGGTGGCATTCTGGGCC
TTAAAGGCTGTCTTAGGCTTAGTGGCAGCTGCTAAAGCCTGAATATCAGCCACCTCATTG
GCAGATGGGGGCTGTGAACTCTGAGGACTAGCATTTGGCCCACTGGCAGCTGCTGTGGCC
TGGTTGGTAGGTGGAGCCTCCGAGATCTGGATGGCCTCCATCAGGGTCTGCATAAGCAAG
GTGCTGTCTTCTACAGAGGCCTCAGCCTGGAAGCCGAGGAGGCCCGCACCACAGTCCATT
TTCTGAGCCATGGTTCTTGTCCCTCTGGCAAGAGCAGAGCCTTGCCTCAGGCCCCAACCC
CAACCCCCTCGTTGCCTCCCTTCT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
286-676, gnl|bosTau2|chrX (26472151-26472541) |
|
286-676, gnl|Hg17|chrX (51638351-51638798) |
|
286-676, gnl|Mm7|chrX (89922509-89922899) |
| |
|
690-962, gnl|bosTau2|chrX (36175508-36175237) |
|
690-962, gnl|canFam2|chrX (21512758-21513321) |
|
690-962, gnl|dasNov1|scaffold_20678 (12768-12199) |
|
690-962, gnl|echTel1|scaffold_269269 (6733-7284) |
|
690-962, gnl|hg17|chrX (25938948-25939517) |
|
690-962, gnl|Hg17|chrX (25939493-25939221) |
|
690-962, gnl|loxAfr1|scaffold_9855 (12412-11849) |
|
690-962, gnl|mm7|chrX (87481069-87480500) |
|
690-962, gnl|Mm7|chrX (87012931-87012659) |
|
690-962, gnl|monDom2|scaffold_30 (5028895-5028344) |
|
690-962, gnl|oryCun1|scaffold_172462 (81121-80552) |
|
690-962, gnl|panTro1|chrX (26816073-26816642) |
|
690-962, gnl|rheMac2|chrX (24012537-24013106) |
|
690-962, gnl|rn3|chrX (79504256-79503687) |
| |
|
1211-1882, gnl|bosTau2|chrX (26475022-26475693) |
|
1211-1882, gnl|Mm7|chrX (89925258-89925935) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
286-676, gnl|bosTau2|chrX (26472151-26472541) |
|
286-676, gnl|Hg17|chrX (51638351-51638798) |
|
286-676, gnl|Mm7|chrX (89922509-89922899) |
| |
|
690-962, gnl|bosTau2|chrX (36175508-36175237) |
|
690-962, gnl|canFam2|chrX (21512758-21513321) |
|
690-962, gnl|dasNov1|scaffold_20678 (12768-12199) |
|
690-962, gnl|echTel1|scaffold_269269 (6733-7284) |
|
690-962, gnl|hg17|chrX (25938948-25939517) |
|
690-962, gnl|Hg17|chrX (25939493-25939221) |
|
690-962, gnl|loxAfr1|scaffold_9855 (12412-11849) |
|
690-962, gnl|mm7|chrX (87481069-87480500) |
|
690-962, gnl|Mm7|chrX (87012931-87012659) |
|
690-962, gnl|monDom2|scaffold_30 (5028895-5028344) |
|
690-962, gnl|oryCun1|scaffold_172462 (81121-80552) |
|
690-962, gnl|panTro1|chrX (26816073-26816642) |
|
690-962, gnl|rheMac2|chrX (24012537-24013106) |
|
690-962, gnl|rn3|chrX (79504256-79503687) |
| |
|
1211-1882, gnl|bosTau2|chrX (26475022-26475693) |
|
1211-1882, gnl|Mm7|chrX (89925258-89925935) |
|
amn (0.835422) |
|
ova (0.774793) |
|
ece (0.687916) |
|
fhi (0.678311) |
|
ute (0.663922) |
|
fcc (0.593354) |
|
pgl (0.592417) |
|
eje (0.494169) |
|
eru (0.480192) |
|
pty (0.428143) |
|
fli (0.405762) |
|
elu (0.385356) |
|
cbr (0.383926) |
|
ese (0.379507) |
|
bla (0.373042) |
|
ecc (0.345105) |
|
cki (0.330469) |
|
cte (0.29274) |
|
pla (0.267344) |
|
ebs (0.236602) |
|
mgp (0.230681) |
|
nep (0.183925) |
|
gul (0.177588) |
|
ton (0.1755) |
|
nje (0.16592) |
|
nco (0.161734) |
|
mga (0.160205) |
|
eli (0.151814) |
|
liv (0.146284) |
|
spl (0.143184) |
|
hyp (0.142837) |
|
csk (0.140746) |
|
nca (0.136874) |
|
ste (0.135208) |
|
kid (0.129735) |
|
med (0.116252) |
|
jca (0.11396) |
|
cty (0.10408) |
|
nbm (0.0993246) |
|
amn (0.835422) |
|
ova (0.774793) |
|
ece (0.687916) |
|
fhi (0.678311) |
|
ute (0.663922) |
|
fcc (0.593354) |
|
pgl (0.592417) |
|
eje (0.494169) |
|
eru (0.480192) |
|
pty (0.428143) |
|
fli (0.405762) |
|
elu (0.385356) |
|
cbr (0.383926) |
|
ese (0.379507) |
|
bla (0.373042) |
|
ecc (0.345105) |
|
cki (0.330469) |
|
cte (0.29274) |
|
pla (0.267344) |
|
ebs (0.236602) |
|
mgp (0.230681) |
|
nep (0.183925) |
|
gul (0.177588) |
|
ton (0.1755) |
|
nje (0.16592) |
|
nco (0.161734) |
|
mga (0.160205) |
|
eli (0.151814) |
|
liv (0.146284) |
|
spl (0.143184) |
|
hyp (0.142837) |
|
csk (0.140746) |
|
nca (0.136874) |
|
ste (0.135208) |
|
kid (0.129735) |
|
med (0.116252) |
|
jca (0.11396) |
|
cty (0.10408) |
|
nbm (0.0993246) |
