Non-Coding RNA Search

Ss1.1-uFN-UNL-P-FN-bk-d-01-0-UNL.s1.3

Sequence:


               
               CCGGGGCGGTGGGAGTCGAGGCTCCGGAGCAAGATGGCGGCGCGAGTGTTGCGCGCCGGC
GGAGCGGCCTCAGGCGGCGGCTTCCTGTGGCGGGCCGCCCCCTGCAGCCTCCTGCCCGGG
CTCCGGAAATTGGCGTCTTCCAATAACAGACTTCGAGAAGAGAGCTGGCTAAAATCCTTG
TTTGTCCGGAAGGTCGATCCGAGGAAGGATGCGCACTCGAACCTCCTGGCCAAGAAGGAA
ACAAGCAGTCTGTACAAATTACAGTTTCACAATGTTAAACCGGAATGCCTAGAAGCATAC
AACAAAATTTGTCAAGAGGTGTTGCCAAAGATTCATGAAGATAAACATTACCCTTGTACT
TTGGTGGGGACTTGGAACACGTGGTATGGCGAGCAGGATCAAGCTGTTCACCTCTGGAGG
TATGAAGGAGGCTATCCTGCGCTCACAGAGGTCATGAATAAACTTAAAGAAAATCAGGAA
TTTTCCCGGTTCCGTAAGGAGAGAAGCAACATGCTTGAAAGCTGTTCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGGGCGGTGGGAGTCGAGGCTCCGGAGCAAGATGGCGGCGCGAGTGTTGCGCGCCGGC
GGAGCGGCCTCAGGCGGCGGCTTCCTGTGGCGGGCCGCCCCCTGCAGCCTCCTGCCCGGG
CTCCGGAAATTGGCGTCTTCCAATAACAGACTTCGAGAAGAGAGCTGGCTAAAATCCTTG
TTTGTCCGGAAGGTCGATCCGAGGAAGGATGCGCACTCGAACCTCCTGGCCAAGAAGGAA
ACAAGCAGTCTGTACAAATTACAGTTTCACAATGTTAAACCGGAATGCCTAGAAGCATAC
AACAAAATTTGTCAAGAGGTGTTGCCAAAGATTCATGAAGATAAACATTACCCTTGTACT
TTGGTGGGGACTTGGAACACGTGGTATGGCGAGCAGGATCAAGCTGTTCACCTCTGGAGG
TATGAAGGAGGCTATCCTGCGCTCACAGAGGTCATGAATAAACTTAAAGAAAATCAGGAA
TTTTCCCGGTTCCGTAAGGAGAGAAGCAACATGCTTGAAAGCTGTTCG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|56206835|emb|CAI25032.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|56206835|emb|CAI25032.1|

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               237-516, gnl|bosTau2|chr11 (33086507-33086784)
               

               
               237-516, gnl|Hg17|chr2 (147425256-147424975)
               

               
               237-516, gnl|Mm7|chr2 (47657848-47657578)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               237-516, gnl|bosTau2|chr11 (33086507-33086784)
               

               
               237-516, gnl|Hg17|chr2 (147425256-147424975)
               

               
               237-516, gnl|Mm7|chr2 (47657848-47657578)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

Help | Less info


               
               che (0.817884)
               

               
               cki (0.330469)
               

               
               sme (0.305437)
               

               
               ssp (0.271039)
               

               
               ece (0.229305)
               

               
               cut (0.169924)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               eje (0.0988338)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.817884)
               

               
               cki (0.330469)
               

               
               sme (0.305437)
               

               
               ssp (0.271039)
               

               
               ece (0.229305)
               

               
               cut (0.169924)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               eje (0.0988338)

	237-516, gnl\|bosTau2\|chr11 (33086507-33086784)
	237-516, gnl\|Hg17\|chr2 (147425256-147424975)
	237-516, gnl\|Mm7\|chr2 (47657848-47657578)

	che (0.817884)
	cki (0.330469)
	sme (0.305437)
	ssp (0.271039)
	ece (0.229305)
	cut (0.169924)
	hyp (0.142837)
	cst (0.140036)
	nca (0.136874)
	eje (0.0988338)