Non-Coding RNA Search

Ss1.1-uFN-UNL-P-FN-bm-c-12-0-UNL.s1.3

Sequence:


               
               AGCAGATCACCCCCAAAGCCGAGCAAATGATCTGGTACCCCAGCCCCTCCGGCCCTTCCC
TAAGACTCCGGTGAGGAGCTGGGAGAGGCAGCAGGAGAAATGACTCAGGGATCACAGTGG
CAGGAGGAGGTGGAACTGAGAGGCCCTCTCTCATGCAGGTTGGGTCCTGAAACCACACTG
GTTCTCAAGATGGCCCTTGACCCATTTCCCACTGGAGCATCGCAGTCCCACTCCCCAAAG
CCCAGCTCACCTGGGTGGGGACAGAGCGTCTCTCTTTTGCTCAACATTCCCACCCCAGGG
CAGGTGCAGCCGCAGGCCTTGCTGAAGTCGAGGGTGAGGCAATGCTAAGAGAGCTCTGTC
TCTCCTTTCGGACCCTGGGGTGGAGCAGGCTGCTCATGTGTCATAAAGAGGAGGTGATTC
TCTCACAAGGCTCACCTCTCAATGGAGTAAGCCCTGCAGTGTTCATAGAACCCCCCTAGT
GTGATGTGGGCTGCAGCAGTGGGAGGCCACAGAGGCACAGGCCCACCCACGGTCCTGTCT
GGGAAAAGAAAGGGAAACCAAATGCTTGAGCACAAGACATACCTCAGCCAGGTAAGCTGC
AGCCGTGCCGGACTGCATCGCCTCTCTCCCCTCCCCCCGTCTCCACACTCTCTCTCACAC
ACACGGTCACGCATAGCCTCATCACTGGGGGCTGACCCTCTTATAGCCTCAGAAGCCTCA
ATACCTTACCCGCCAGGTCCATGCAGGGCATAGGCAGAGGGTGTCCTGGGTCTGGGTCAG
GGAGGAGCCCAGTTGGCCAGTGCCAGGCCCACTTGAAGACATCACAGACATTGGCCAATA
TGTCTTTCTCAGGGGTTTGGTCACGAAGGATGGACTCTTCCCACCCGGAGGACGCAGGGC
CAGTGCATTCTGTCTTCCTGGTCATTGGATCCTCTCCCTCTCCCAGGCAGCTTGCCCAGC
CTCACCCTCTCAGTGAGCCCTTGCTGCCCTCAGGGCATTAGCAGGGTCTCAGCCTGAAAG
CCCCAGGGTGGGGAGTGCCAGCAGGTGCCCCCCCCAGAACACCTGGGCCAAGAGAAACTT
TGCTGAGGGTACAGCCCTGAGGCCATGGCATTCATTGGCCAGGGCTGCTCTGTCTTTTCC
CCCTCCCTAACTTACTTGTTTTCTAACCAGGAAAAAATGTGATAGCACATGGGTAGCCTA
GGCAGTGGATAAATACCTCAGATGTCCTCTTGCAGCAAGTGTCTGTATATGTTGTGGTTA
TTTTCTATCTTACATGTTTTCGAATGTTTATATTTCAATAAACCTCTACCTCTTCACACA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCAGATCACCCCCAAAGCCGAGCAAATGATCTGGTACCCCAGCCCCTCCGGCCCTTCCC
TAAGACTCCGGTGAGGAGCTGGGAGAGGCAGCAGGAGAAATGACTCAGGGATCACAGTGG
CAGGAGGAGGTGGAACTGAGAGGCCCTCTCTCATGCAGGTTGGGTCCTGAAACCACACTG
GTTCTCAAGATGGCCCTTGACCCATTTCCCACTGGAGCATCGCAGTCCCACTCCCCAAAG
CCCAGCTCACCTGGGTGGGGACAGAGCGTCTCTCTTTTGCTCAACATTCCCACCCCAGGG
CAGGTGCAGCCGCAGGCCTTGCTGAAGTCGAGGGTGAGGCAATGCTAAGAGAGCTCTGTC
TCTCCTTTCGGACCCTGGGGTGGAGCAGGCTGCTCATGTGTCATAAAGAGGAGGTGATTC
TCTCACAAGGCTCACCTCTCAATGGAGTAAGCCCTGCAGTGTTCATAGAACCCCCCTAGT
GTGATGTGGGCTGCAGCAGTGGGAGGCCACAGAGGCACAGGCCCACCCACGGTCCTGTCT
GGGAAAAGAAAGGGAAACCAAATGCTTGAGCACAAGACATACCTCAGCCAGGTAAGCTGC
AGCCGTGCCGGACTGCATCGCCTCTCTCCCCTCCCCCCGTCTCCACACTCTCTCTCACAC
ACACGGTCACGCATAGCCTCATCACTGGGGGCTGACCCTCTTATAGCCTCAGAAGCCTCA
ATACCTTACCCGCCAGGTCCATGCAGGGCATAGGCAGAGGGTGTCCTGGGTCTGGGTCAG
GGAGGAGCCCAGTTGGCCAGTGCCAGGCCCACTTGAAGACATCACAGACATTGGCCAATA
TGTCTTTCTCAGGGGTTTGGTCACGAAGGATGGACTCTTCCCACCCGGAGGACGCAGGGC
CAGTGCATTCTGTCTTCCTGGTCATTGGATCCTCTCCCTCTCCCAGGCAGCTTGCCCAGC
CTCACCCTCTCAGTGAGCCCTTGCTGCCCTCAGGGCATTAGCAGGGTCTCAGCCTGAAAG
CCCCAGGGTGGGGAGTGCCAGCAGGTGCCCCCCCCAGAACACCTGGGCCAAGAGAAACTT
TGCTGAGGGTACAGCCCTGAGGCCATGGCATTCATTGGCCAGGGCTGCTCTGTCTTTTCC
CCCTCCCTAACTTACTTGTTTTCTAACCAGGAAAAAATGTGATAGCACATGGGTAGCCTA
GGCAGTGGATAAATACCTCAGATGTCCTCTTGCAGCAAGTGTCTGTATATGTTGTGGTTA
TTTTCTATCTTACATGTTTTCGAATGTTTATATTTCAATAAACCTCTACCTCTTCACACA
AAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               116-234, - strand, RNAz p=0.99779
               

               
               896-1013, - strand, RNAz p=0.790703

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               116-234, - strand, RNAz p=0.99779
               

               
               896-1013, - strand, RNAz p=0.790703

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1321, gnl|bosTau2|chr21 (22780937-22782253)
               

               
               1-1321, gnl|Hg17|chr15 (72676236-72677525)
               

               
               1-1321, gnl|Mm7|chr9 (57819201-57818019)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1321, gnl|bosTau2|chr21 (22780937-22782253)
               

               
               1-1321, gnl|Hg17|chr15 (72676236-72677525)
               

               
               1-1321, gnl|Mm7|chr9 (57819201-57818019)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fcc (0.197785)
               

               
               csp (0.161186)
               

               
               lnt (0.142308)
               

               
               med (0.116252)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               csp (0.161186)
               

               
               lnt (0.142308)
               

               
               med (0.116252)

	116-234, - strand, RNAz p=0.99779
	896-1013, - strand, RNAz p=0.790703

	1-1321, gnl\|bosTau2\|chr21 (22780937-22782253)
	1-1321, gnl\|Hg17\|chr15 (72676236-72677525)
	1-1321, gnl\|Mm7\|chr9 (57819201-57818019)