Non-Coding RNA Search

Ss1.1-uFN-UNL-P-FN-bm-e-02-0-UNL.s1.3

Sequence:


               
               GAAGGGCCTTTCACATTCCCCAATGGGGAGGCCGTGGAACACAGTGAGGAGAGTAAGGAT
CGGACCATCATGCTCATGGGAGTGTCCTCACAGAAGATTTCTGTTCGGCTGAAGAGGACT
GTTGCCCATAAGGCCACTCAGACCGAATCACTGTCTTGGCTTAGCAGCGAGGGCCCTTCT
GGTCACTTTGTGCTATCTTCCCCAAGGAAGACAGCCCAGGATACTCTGTACGTGCTTCCC
AGCCCTACATCTCCGTGTCCCAGCCCAGTCTTGGTCAGAAAGCGGGCTTTCGTCAAGTGG
GAGAATAAAGAATCCCTCATAAAATCAAAGGAAGAGCTCCGTCACCTCAGACTCCCCACC
TACCAAGAGCTGGAACAGGAAATAAACACCCTGAAAGCAGATAATAATGCTCTTAAGATC
CAACTGAAATATGCACAGAAGAAGATAGAAACCCTCCAGCTTGCAAGAAGTAATCATGTC
TTGGCTCAGATGGAGCACGGTGACTGTTCTTAGCCCAGAAATTCAAGCAGCACAACCTAT
AGATGAGGATATCAGAGATCCATCTCATTTCCTAATAAACCTCTCAACACAAAGACCTGG
GGAACCTTAGATTGACTGGCTTTAAAAATGATACTTTAAAAAAAGAAAGCTGGTTACTCT
TTTTTTTAACCTAAAATACTCTTAATGTGTGGTGTATTCCAGTCTGTTGAATCAAAGGAG
AAGAAAGCTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGGGCCTTTCACATTCCCCAATGGGGAGGCCGTGGAACACAGTGAGGAGAGTAAGGAT
CGGACCATCATGCTCATGGGAGTGTCCTCACAGAAGATTTCTGTTCGGCTGAAGAGGACT
GTTGCCCATAAGGCCACTCAGACCGAATCACTGTCTTGGCTTAGCAGCGAGGGCCCTTCT
GGTCACTTTGTGCTATCTTCCCCAAGGAAGACAGCCCAGGATACTCTGTACGTGCTTCCC
AGCCCTACATCTCCGTGTCCCAGCCCAGTCTTGGTCAGAAAGCGGGCTTTCGTCAAGTGG
GAGAATAAAGAATCCCTCATAAAATCAAAGGAAGAGCTCCGTCACCTCAGACTCCCCACC
TACCAAGAGCTGGAACAGGAAATAAACACCCTGAAAGCAGATAATAATGCTCTTAAGATC
CAACTGAAATATGCACAGAAGAAGATAGAAACCCTCCAGCTTGCAAGAAGTAATCATGTC
TTGGCTCAGATGGAGCACGGTGACTGTTCTTAGCCCAGAAATTCAAGCAGCACAACCTAT
AGATGAGGATATCAGAGATCCATCTCATTTCCTAATAAACCTCTCAACACAAAGACCTGG
GGAACCTTAGATTGACTGGCTTTAAAAATGATACTTTAAAAAAAGAAAGCTGGTTACTCT
TTTTTTTAACCTAAAATACTCTTAATGTGTGGTGTATTCCAGTCTGTTGAATCAAAGGAG
AAGAAAGCTGAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|55641833|ref|XP_510293.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|55641833|ref|XP_510293.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               121-240, - strand, RNAz p=0.808702
               

               
               262-379, - strand, RNAz p=0.719234

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-240, - strand, RNAz p=0.808702
               

               
               262-379, - strand, RNAz p=0.719234

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-379, gnl|bosTau2|chr10 (22639692-22639314)
               

               
               1-379, gnl|Hg17|chr15 (36574252-36573874)
               

               
               1-379, gnl|Mm7|chr2 (117026072-117025700)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-379, gnl|bosTau2|chr10 (22639692-22639314)
               

               
               1-379, gnl|Hg17|chr15 (36574252-36573874)
               

               
               1-379, gnl|Mm7|chr2 (117026072-117025700)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               tra (0.123092)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.123092)
               

               
               ecc (0.115035)

	121-240, - strand, RNAz p=0.808702
	262-379, - strand, RNAz p=0.719234

	1-379, gnl\|bosTau2\|chr10 (22639692-22639314)
	1-379, gnl\|Hg17\|chr15 (36574252-36573874)
	1-379, gnl\|Mm7\|chr2 (117026072-117025700)