Non-Coding RNA Search

Ss1.1-uFN-UNL-P-FN-bn-b-01-0-UNL.s1.3

Sequence:


               
               ACTCAAGTGCCCGGCCTCCTGCACCGATTCCCAGGCTCAGGTGTGGTCTCTCTATCGCCT
GGGGAAGCTCCAGGAGTCTTGGTTCTTCCACCTTCAACTCTTTCTCCCAGGGGAGTCAAG
ATCAGGCAGATACCCTTATTCCAAAAAGCTCCCCCTCTCCCTCCCTGGCCCACCTGCGAT
TGCACACAGGCACTTTGCTGCCCCCTGGTGGCATCCTGAGGAAAAGCAGGGCCTGCTTTC
ACAGGGAGGAAGCCTGAGGTTTGCGAGCAGGATCTGGCCACTGGCTTTCATTCCTGGCTC
TTCTCAGACCTCCCTGGACCACATCAGCCTCCTGCTATTCCCTTAGTCCAACCACTGTCA
TGTCTTGGACACTTTACCTGTCTGCTGGATACCACTCCTGTGCCACCTGGCCTCAGAGCT
TTTTCTCTAGTGCCTGAGGGCGGAGACACGCCCCCAGACATAAGTCCTTCTGGCCTCAGT
TGCTCCAAGTTTCCCAGGGTCCACAGTGTTCCCTTCCCTGGCCTCACCTTTCTGGTCCAT
GACTGATGGGAGATAAGAATAAAAATAACAGTGACACCCAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTCAAGTGCCCGGCCTCCTGCACCGATTCCCAGGCTCAGGTGTGGTCTCTCTATCGCCT
GGGGAAGCTCCAGGAGTCTTGGTTCTTCCACCTTCAACTCTTTCTCCCAGGGGAGTCAAG
ATCAGGCAGATACCCTTATTCCAAAAAGCTCCCCCTCTCCCTCCCTGGCCCACCTGCGAT
TGCACACAGGCACTTTGCTGCCCCCTGGTGGCATCCTGAGGAAAAGCAGGGCCTGCTTTC
ACAGGGAGGAAGCCTGAGGTTTGCGAGCAGGATCTGGCCACTGGCTTTCATTCCTGGCTC
TTCTCAGACCTCCCTGGACCACATCAGCCTCCTGCTATTCCCTTAGTCCAACCACTGTCA
TGTCTTGGACACTTTACCTGTCTGCTGGATACCACTCCTGTGCCACCTGGCCTCAGAGCT
TTTTCTCTAGTGCCTGAGGGCGGAGACACGCCCCCAGACATAAGTCCTTCTGGCCTCAGT
TGCTCCAAGTTTCCCAGGGTCCACAGTGTTCCCTTCCCTGGCCTCACCTTTCTGGTCCAT
GACTGATGGGAGATAAGAATAAAAATAACAGTGACACCCAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-152, - strand, RNAz p=0.96292

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-152, - strand, RNAz p=0.96292

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-582, gnl|bosTau2|chr5 (23318087-23318674)
               

               
               1-582, gnl|Hg17|chr12 (48547586-48546944)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-582, gnl|bosTau2|chr5 (23318087-23318674)
               

               
               1-582, gnl|Hg17|chr12 (48547586-48546944)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fcc (0.791139)
               

               
               fhi (0.508733)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               ece (0.229305)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.791139)
               

               
               fhi (0.508733)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               ece (0.229305)

	1-582, gnl\|bosTau2\|chr5 (23318087-23318674)
	1-582, gnl\|Hg17\|chr12 (48547586-48546944)

	fcc (0.791139)
	fhi (0.508733)
	hyp (0.285673)
	fce (0.271592)
	ece (0.229305)