Ss1.1-uFN-UNL-P-FN-bn-h-05-0-UNL.s1.3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCAGACGAGAGCTTAAGGGTCGCAAGAGTGAACCCCATCAGAGATGGCTCCTGCTGGCC TGAGCCTCAGCGCCACTGTCCTTGGCCTCTTGGCCTGGGCCAGCCTGGCCACCGGGGACC GGGTTTATATACACCCCTTCCACCTCCTCGTCTACAGCAAGAGCAGCTGTGAGCAGCTGG AGAAAACTGGGGCAGAGACCCCCGCAGACCCGACGTTCGCGCCTGTCCCCATTCAGGCCA AGTCGTCCCCCGTGGACGAGGAGGCCCTGCGGGAAGCGCTGGTTCAAGCCACCGAGGGGC CTGGAGGCCGAGGACCGGCTGAGGGCTGCGAAAGTGGGGATGCTGCTCAATTTCATGGGC TTCCACATGTACAAGACGCTGAGCGCCACATGGAGCGTGGCCGGCGGGGCTGTGTTCTCC CCGGTGGCTCTCTTTGGCACACTGACCTCCTTCTACCTGGGCGCCTCAGACCCCACGGCC AGAAGACTACAGGCCTTCCTGGGCGTCCCTGGGGAGGATCAGGGCTGCACCTCCCGGCTG GACGGTCACAAGGTCCTGTCTGCCCTGCAGACCATCCAGGGCCTTCTGGTCACCCAGGGT GGGGCCGGCAGCCAGGCCAGGCTGCTCCTATCCACAGTGGTCGGCCTGTTCACGGCCCCC GGGCTGCGCCTGAAGCAGCGGTTCGTGCAGGACCTGGCTCCCTTCGCCGTCACCCTCCCA CGCTCCCTAGACCTGTCCTCAGACCCAGATCTCGCTGCTGAGAAGATCAACAGGTTCATG CAGGCGGTGACAGGGTGGAAGATGGGCACGCCGCTGAGAGGGGTCAGCCCAGACAGCACC CTACTCCTCAATACCTACGTGCACTTCCAAGGAAAGGTGAAGGGCTTCTCCCTGCTGCCG GGGCTCCAGGAGTTCCGGGTGGACAACACCACCTCAGTGTCGGTCCCCATGCTCTCGGGC ACTGGTACCTTCCACTACTGGAGCGACGACCAGAACAACCTCTCAGTGATCCGCGTGCCC CTCAGCGCCCATGCCAGCCTGCTGCTCATCCAGCCACACACCTTCGACCTGCACAAGGTC GAGGCCCTCACCTTCCAGCACAACTTCCTGACCTGGACCAAGAACCTGTCTCCCCGGGCC ATCCGCCTGACAATGCCCCAGCTGACACTGCAAGGGTCCTATGACCTGCAGGACCTGCTG GCCCAGACCAAGCTGCCCACGCTGCTAGGTGCTGAGGCAAACCTGCGCAAAATCAGTGAT GATGACCTCAGGGTTGGAAAGGTGCTGAACAGCGTCCTTTTTGAGCTCAAAGCAGACGAG GGAGAGCAGCCCACGGAGTCCGCCCTGCAGCCGGCCGGGCCCGAGGCCTTGGAGGTGACG CTGAACAGCCCATTCCTATTGGCCGTCTTGGAGCGAGAATCAGCTGCCCTGACCTTCCTG GGCCGTGTGGCCAACCCCATAAGTGCCGCCTGAGGCTTGGCCCTGGCATCACCAGGGCCA CCAGCGTGCCACCACCAGTCACCACCCATCTCCATTCTCTTCCATGGAGTCTGCCTAGAG CCAAGAGCGGCGCTGCTCTGAGAACCATGCTGTGTACAAAGGGTGGCAGCCCAGGGCAGG TGCCGGGCAGAGCCGAGTCTGGCACAGACCCCGTTCCCCAAAGAGCTTGAACACACCGGC TTATTGGTGAAACCTGAAACACATTCCCTTTTCACTGAGAACAGGCATTGGGCTTTAAAA CAAAAACATCCATTTTCTTTCATTGCCCCAGACTCACCTATGGCTTATTGAGTATGGCGA CCTGCAGGAAACCACAGTGCCTTCCTTTCTCTAAATTTCTTGGTATTTCTTTCCCCTGAT ACTTGTGGTTTTTGAAAAACACATCATGAAAACACAAGCCTGTGAATGTATGTTAGACCG TAATCCTGCGGCTGGTTATCCCTGTGTTATTAATAAATGTCTTGCAACAATAAAAAAAAA AAAAAAAAAAAATCACTTGGCAGTTGCAGGACAAACATGTGGAGGTCGCTGACAGGCTGT ACCCACAAAAGGGCTTTTGGGAGTTGGAGCCGTGTTTGGATGGGGTTTCCATGGAAGCAC AGCCTGTTTTCAGCTTCGCAGGGAGAAGCTCTGGGTGATGGTGACCAGCTGGGAAGGACG GGGGCGGGGACAGCTGGCATTTCCTCATCCTGCCCAGACACCTTGGACTGCTGCTCACAC TGTGCCTGGGAGCAGAAGACGGAGAAGGAAATCTTCACCATGACCCGGGCACGTCCCTCT CAGTGGGATTAGACCTGCACCTTCTAAATCTCAGGCAGAGCCTGAGAGGGCGGTGGCCCT GGAAGGTCTGTGCTTCTCGCCCATGAAATGCAGAGTCAGTACCTCCTCTCCCTCTCATAA ATACTGAAAAGACTAAGCAGGCTTAAGAAAGGAGACAGATGGGCTCCAGACTAGACATCT ACAACCAGCCTCCCGTTTATACTTCAAAGGAGAAATAACAGCAACAGGGTAAATAGCGGA CTTTGCCTCCTGTGGATTAAGACACTGGTAATGGCTGGGGCAGAGAGCGGCTAAGTCCTG CTTGGGTAAAAGACCAAGAGGTCACATATTTCTCATCCTTGGGGTCAGGGAGACCCTGAC TGTACATGTGCAGAGAGGTTCTTTGGGGTCAAGAAGGGAGGGGTGCTACCCCATAACAGG TGTTGTCAATCTTCCCAAAACCCCCCAGGCTGGAATCCACCTTTGCTAAAAGATGTGCAC ACATACCAGGTAGGGCCCTGGGTTTGAACTGGTATGAGAAACACAGCAAGGTAACTGGCC AGAGGAAAACAAAGACCCTGAACAACTGCCCCATATAAGTGATTAAATTACCCCTTGGAA GGCTCCCCACCAGCAGGCGCATCCATCCACACTCTGTTCTGTTTCTCTTCTAAACTGCTT CCCATTGTGCTCTTCCACGTGTGCTGTGCTTATAGTAATAAACTTTATACCTGTTTTTAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCAGACGAGAGCTTAAGGGTCGCAAGAGTGAACCCCATCAGAGATGGCTCCTGCTGGCC TGAGCCTCAGCGCCACTGTCCTTGGCCTCTTGGCCTGGGCCAGCCTGGCCACCGGGGACC GGGTTTATATACACCCCTTCCACCTCCTCGTCTACAGCAAGAGCAGCTGTGAGCAGCTGG AGAAAACTGGGGCAGAGACCCCCGCAGACCCGACGTTCGCGCCTGTCCCCATTCAGGCCA AGTCGTCCCCCGTGGACGAGGAGGCCCTGCGGGAAGCGCTGGTTCAAGCCACCGAGGGGC CTGGAGGCCGAGGACCGGCTGAGGGCTGCGAAAGTGGGGATGCTGCTCAATTTCATGGGC TTCCACATGTACAAGACGCTGAGCGCCACATGGAGCGTGGCCGGCGGGGCTGTGTTCTCC CCGGTGGCTCTCTTTGGCACACTGACCTCCTTCTACCTGGGCGCCTCAGACCCCACGGCC AGAAGACTACAGGCCTTCCTGGGCGTCCCTGGGGAGGATCAGGGCTGCACCTCCCGGCTG GACGGTCACAAGGTCCTGTCTGCCCTGCAGACCATCCAGGGCCTTCTGGTCACCCAGGGT GGGGCCGGCAGCCAGGCCAGGCTGCTCCTATCCACAGTGGTCGGCCTGTTCACGGCCCCC GGGCTGCGCCTGAAGCAGCGGTTCGTGCAGGACCTGGCTCCCTTCGCCGTCACCCTCCCA CGCTCCCTAGACCTGTCCTCAGACCCAGATCTCGCTGCTGAGAAGATCAACAGGTTCATG CAGGCGGTGACAGGGTGGAAGATGGGCACGCCGCTGAGAGGGGTCAGCCCAGACAGCACC CTACTCCTCAATACCTACGTGCACTTCCAAGGAAAGGTGAAGGGCTTCTCCCTGCTGCCG GGGCTCCAGGAGTTCCGGGTGGACAACACCACCTCAGTGTCGGTCCCCATGCTCTCGGGC ACTGGTACCTTCCACTACTGGAGCGACGACCAGAACAACCTCTCAGTGATCCGCGTGCCC CTCAGCGCCCATGCCAGCCTGCTGCTCATCCAGCCACACACCTTCGACCTGCACAAGGTC GAGGCCCTCACCTTCCAGCACAACTTCCTGACCTGGACCAAGAACCTGTCTCCCCGGGCC ATCCGCCTGACAATGCCCCAGCTGACACTGCAAGGGTCCTATGACCTGCAGGACCTGCTG GCCCAGACCAAGCTGCCCACGCTGCTAGGTGCTGAGGCAAACCTGCGCAAAATCAGTGAT GATGACCTCAGGGTTGGAAAGGTGCTGAACAGCGTCCTTTTTGAGCTCAAAGCAGACGAG GGAGAGCAGCCCACGGAGTCCGCCCTGCAGCCGGCCGGGCCCGAGGCCTTGGAGGTGACG CTGAACAGCCCATTCCTATTGGCCGTCTTGGAGCGAGAATCAGCTGCCCTGACCTTCCTG GGCCGTGTGGCCAACCCCATAAGTGCCGCCTGAGGCTTGGCCCTGGCATCACCAGGGCCA CCAGCGTGCCACCACCAGTCACCACCCATCTCCATTCTCTTCCATGGAGTCTGCCTAGAG CCAAGAGCGGCGCTGCTCTGAGAACCATGCTGTGTACAAAGGGTGGCAGCCCAGGGCAGG TGCCGGGCAGAGCCGAGTCTGGCACAGACCCCGTTCCCCAAAGAGCTTGAACACACCGGC TTATTGGTGAAACCTGAAACACATTCCCTTTTCACTGAGAACAGGCATTGGGCTTTAAAA CAAAAACATCCATTTTCTTTCATTGCCCCAGACTCACCTATGGCTTATTGAGTATGGCGA CCTGCAGGAAACCACAGTGCCTTCCTTTCTCTAAATTTCTTGGTATTTCTTTCCCCTGAT ACTTGTGGTTTTTGAAAAACACATCATGAAAACACAAGCCTGTGAATGTATGTTAGACCG TAATCCTGCGGCTGGTTATCCCTGTGTTATTAATAAATGTCTTGCAACAATAAAAAAAAA AAAAAAAAAAAATCACTTGGCAGTTGCAGGACAAACATGTGGAGGTCGCTGACAGGCTGT ACCCACAAAAGGGCTTTTGGGAGTTGGAGCCGTGTTTGGATGGGGTTTCCATGGAAGCAC AGCCTGTTTTCAGCTTCGCAGGGAGAAGCTCTGGGTGATGGTGACCAGCTGGGAAGGACG GGGGCGGGGACAGCTGGCATTTCCTCATCCTGCCCAGACACCTTGGACTGCTGCTCACAC TGTGCCTGGGAGCAGAAGACGGAGAAGGAAATCTTCACCATGACCCGGGCACGTCCCTCT CAGTGGGATTAGACCTGCACCTTCTAAATCTCAGGCAGAGCCTGAGAGGGCGGTGGCCCT GGAAGGTCTGTGCTTCTCGCCCATGAAATGCAGAGTCAGTACCTCCTCTCCCTCTCATAA ATACTGAAAAGACTAAGCAGGCTTAAGAAAGGAGACAGATGGGCTCCAGACTAGACATCT ACAACCAGCCTCCCGTTTATACTTCAAAGGAGAAATAACAGCAACAGGGTAAATAGCGGA CTTTGCCTCCTGTGGATTAAGACACTGGTAATGGCTGGGGCAGAGAGCGGCTAAGTCCTG CTTGGGTAAAAGACCAAGAGGTCACATATTTCTCATCCTTGGGGTCAGGGAGACCCTGAC TGTACATGTGCAGAGAGGTTCTTTGGGGTCAAGAAGGGAGGGGTGCTACCCCATAACAGG TGTTGTCAATCTTCCCAAAACCCCCCAGGCTGGAATCCACCTTTGCTAAAAGATGTGCAC ACATACCAGGTAGGGCCCTGGGTTTGAACTGGTATGAGAAACACAGCAAGGTAACTGGCC AGAGGAAAACAAAGACCCTGAACAACTGCCCCATATAAGTGATTAAATTACCCCTTGGAA GGCTCCCCACCAGCAGGCGCATCCATCCACACTCTGTTCTGTTTCTCTTCTAAACTGCTT CCCATTGTGCTCTTCCACGTGTGCTGTGCTTATAGTAATAAACTTTATACCTGTTTTTAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 7 entry(ies) | More info |
| Predicted RNA structure(s): 7 entry(ies) | Help | Less info |
| Predicted RNA structure(s): 7 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 39-877, gnl|bosTau2|chr28 (34794247-34795087) | |
| 39-877, gnl|canFam2|chr4 (11686540-11685910) | |
| 39-877, gnl|echTel1|scaffold_315971 (1383-762) | |
| 39-877, gnl|galGal2|chr3 (36629935-36630559) | |
| 39-877, gnl|hg17|chr1 (227152443-227153072) | |
| 39-877, gnl|Hg17|chr1 (227153310-227152470) | |
| 39-877, gnl|mm7|chr8 (123150864-123151490) | |
| 39-877, gnl|Mm7|chr8 (123151728-123150888) | |
| 39-877, gnl|monDom2|scaffold_13 (59092979-59093607) | |
| 39-877, gnl|oryCun1|scaffold_198292 (183048-182419) | |
| 39-877, gnl|panTro1|chr1 (211000301-211000930) | |
| 39-877, gnl|rheMac2|chr1 (226257195-226256567) | |
| 39-877, gnl|rn3|chr19 (54748857-54749484) | |
| 1128-1287, gnl|bosTau2|chr28 (34799718-34799878) | |
| 1128-1287, gnl|canFam2|chr4 (11692176-11691797) | |
| 1128-1287, gnl|echTel1|scaffold_315971 (7282-6963) | |
| 1128-1287, gnl|hg17|chr1 (227146486-227146845) | |
| 1128-1287, gnl|Hg17|chr1 (227146828-227146668) | |
| 1128-1287, gnl|mm7|chr8 (123144771-123145072) | |
| 1128-1287, gnl|Mm7|chr8 (123145066-123144910) | |
| 1128-1287, gnl|monDom2|scaffold_13 (59085049-59085446) | |
| 1128-1287, gnl|oryCun1|scaffold_198292 (189017-188671) | |
| 1128-1287, gnl|panTro1|chr1 (210994299-210994658) | |
| 1128-1287, gnl|rheMac2|chr1 (226263163-226262804) | |
| 1128-1287, gnl|rn3|chr19 (54744400-54744713) | |
| 1621-2424, gnl|bosTau2|chr28 (34800910-34801720) | |
| 2426-3000, gnl|bosTau2|chr23 (7518573-7519171) | |
| 2430-2920, gnl|bosTau2|chr11 (78696761-78696273) | |
| 2437-2876, gnl|bosTau2|chr10 (7136588-7136143) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 39-877, gnl|bosTau2|chr28 (34794247-34795087) | |
| 39-877, gnl|canFam2|chr4 (11686540-11685910) | |
| 39-877, gnl|echTel1|scaffold_315971 (1383-762) | |
| 39-877, gnl|galGal2|chr3 (36629935-36630559) | |
| 39-877, gnl|hg17|chr1 (227152443-227153072) | |
| 39-877, gnl|Hg17|chr1 (227153310-227152470) | |
| 39-877, gnl|mm7|chr8 (123150864-123151490) | |
| 39-877, gnl|Mm7|chr8 (123151728-123150888) | |
| 39-877, gnl|monDom2|scaffold_13 (59092979-59093607) | |
| 39-877, gnl|oryCun1|scaffold_198292 (183048-182419) | |
| 39-877, gnl|panTro1|chr1 (211000301-211000930) | |
| 39-877, gnl|rheMac2|chr1 (226257195-226256567) | |
| 39-877, gnl|rn3|chr19 (54748857-54749484) | |
| 1128-1287, gnl|bosTau2|chr28 (34799718-34799878) | |
| 1128-1287, gnl|canFam2|chr4 (11692176-11691797) | |
| 1128-1287, gnl|echTel1|scaffold_315971 (7282-6963) | |
| 1128-1287, gnl|hg17|chr1 (227146486-227146845) | |
| 1128-1287, gnl|Hg17|chr1 (227146828-227146668) | |
| 1128-1287, gnl|mm7|chr8 (123144771-123145072) | |
| 1128-1287, gnl|Mm7|chr8 (123145066-123144910) | |
| 1128-1287, gnl|monDom2|scaffold_13 (59085049-59085446) | |
| 1128-1287, gnl|oryCun1|scaffold_198292 (189017-188671) | |
| 1128-1287, gnl|panTro1|chr1 (210994299-210994658) | |
| 1128-1287, gnl|rheMac2|chr1 (226263163-226262804) | |
| 1128-1287, gnl|rn3|chr19 (54744400-54744713) | |
| 1621-2424, gnl|bosTau2|chr28 (34800910-34801720) | |
| 2426-3000, gnl|bosTau2|chr23 (7518573-7519171) | |
| 2430-2920, gnl|bosTau2|chr11 (78696761-78696273) | |
| 2437-2876, gnl|bosTau2|chr10 (7136588-7136143) |
| Expressed library(ies): 25 entry(ies) | More info |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
| cli (2.29218) | |
| eli (1.21451) | |
| fhi (1.01747) | |
| fli (1.0144) | |
| cov (0.792917) | |
| fat (0.58971) | |
| spc (0.566829) | |
| fbs (0.526039) | |
| fcc (0.39557) | |
| med (0.348756) | |
| hyp (0.285673) | |
| pla (0.267344) | |
| cbe (0.239234) | |
| jca (0.22792) | |
| nms (0.213858) | |
| sto (0.179824) | |
| ton (0.1755) | |
| nje (0.16592) | |
| ctl (0.153069) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| hlv (0.139256) | |
| cly (0.120642) | |
| clu (0.119646) | |
| pgl (0.118483) |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (2.29218) | |
| eli (1.21451) | |
| fhi (1.01747) | |
| fli (1.0144) | |
| cov (0.792917) | |
| fat (0.58971) | |
| spc (0.566829) | |
| fbs (0.526039) | |
| fcc (0.39557) | |
| med (0.348756) | |
| hyp (0.285673) | |
| pla (0.267344) | |
| cbe (0.239234) | |
| jca (0.22792) | |
| nms (0.213858) | |
| sto (0.179824) | |
| ton (0.1755) | |
| nje (0.16592) | |
| ctl (0.153069) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| hlv (0.139256) | |
| cly (0.120642) | |
| clu (0.119646) | |
| pgl (0.118483) |