Non-Coding RNA Search

Ss1.1-uFN-UNL-P-FN-bn-h-11-0-UNL.s1.3

Sequence:


               
               AACCAACTCATGCAGTATGACCAGTGTTTGACAAAGGGGGCTGATGGATCAAAAGTTATG
ATTACACACTGTAACCTGAACGAGTTTAAGGAATGGCAGTACCTCAAGAACCTGCACAGA
CTGACTCACATTCCTTCTGGAATGTGCCTGGATCGCTCAGAGGTTCTCCATCAAGTGTTC
ATCTCCAATTGTGACTCCAGCAAAATGACTCAAAAGTGGGAAATAAATAACATCCATAGT
GTTTAGAAAGAATGAAAGAAACCAAGAACCTACCTACTGACAATGTACATTTTCCACAGG
ACTGAAAACCGGCTGAAAACTGCTGCAACTGTTGTTCCCTGTACAGCTCCAAATCCAGAT
CCTCCCAGGAGCCCGAGGACATTGATAAAATGTGATTTTACAATAACATTATCATCTGCA
GTTCCTGTTTACAAAACTGCTTTTACCTTAAACTTTGTAGATGTTTACATCTTTTTGTTT
TGTTTCGTTTTAAGATGATGTTGGTAATCTGCTTTTAGCTCTGACTTAGAGTTAAAGGCA
TTGTTGTCTTCTTTGGGATTACACTCAGGGTCTGAAAGGCAGTTTGATTTTCTTTTTTGT
TTGTTTTTAACACACTTGAAAAAAGGTTGGAGAAACCAGACTCTCATATATAACTTGGAG
GTTATCAACCTGTTGTGTCTTTATTTAATTTTACATCTTTTTGAAGCACTGCCACAGGTT
ATTAGCCGAGGTGGCCTTCCTTCACGGTCATGCTGCTTTTTTGAAAGGTGAATTCAACAC
ATTTAGTGCCTCTTTCATTTCTTGGTATATGCTTCAAGAGCTTTTGATGCGATTTGTAGG
AAGGTAATGATGGAATTGTCACCTGTCGGAGGAATGCTTTTACTACTCAGAACTGAGTTT
ATGCACTACCACCTGCTCTGAAATGGGACGGTGTGTGTGGCTTAGAAAGATGACTAGATG
GAACATCCAGGGCGGTCCCTTAGGTGTGAAGATTGTACGACATTAGCTCCCTTTCTTGTC
GGCATTCCTAGCGCCCTAAAGCAGCAGAGGGGTCTCCAACTAGAGGAAAATTGTCCCCTG
GCATCTGGGATTGGCTTTTACCAGTACTTGTCGCTACAGAAAACTATAAATANTTCTCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACCAACTCATGCAGTATGACCAGTGTTTGACAAAGGGGGCTGATGGATCAAAAGTTATG
ATTACACACTGTAACCTGAACGAGTTTAAGGAATGGCAGTACCTCAAGAACCTGCACAGA
CTGACTCACATTCCTTCTGGAATGTGCCTGGATCGCTCAGAGGTTCTCCATCAAGTGTTC
ATCTCCAATTGTGACTCCAGCAAAATGACTCAAAAGTGGGAAATAAATAACATCCATAGT
GTTTAGAAAGAATGAAAGAAACCAAGAACCTACCTACTGACAATGTACATTTTCCACAGG
ACTGAAAACCGGCTGAAAACTGCTGCAACTGTTGTTCCCTGTACAGCTCCAAATCCAGAT
CCTCCCAGGAGCCCGAGGACATTGATAAAATGTGATTTTACAATAACATTATCATCTGCA
GTTCCTGTTTACAAAACTGCTTTTACCTTAAACTTTGTAGATGTTTACATCTTTTTGTTT
TGTTTCGTTTTAAGATGATGTTGGTAATCTGCTTTTAGCTCTGACTTAGAGTTAAAGGCA
TTGTTGTCTTCTTTGGGATTACACTCAGGGTCTGAAAGGCAGTTTGATTTTCTTTTTTGT
TTGTTTTTAACACACTTGAAAAAAGGTTGGAGAAACCAGACTCTCATATATAACTTGGAG
GTTATCAACCTGTTGTGTCTTTATTTAATTTTACATCTTTTTGAAGCACTGCCACAGGTT
ATTAGCCGAGGTGGCCTTCCTTCACGGTCATGCTGCTTTTTTGAAAGGTGAATTCAACAC
ATTTAGTGCCTCTTTCATTTCTTGGTATATGCTTCAAGAGCTTTTGATGCGATTTGTAGG
AAGGTAATGATGGAATTGTCACCTGTCGGAGGAATGCTTTTACTACTCAGAACTGAGTTT
ATGCACTACCACCTGCTCTGAAATGGGACGGTGTGTGTGGCTTAGAAAGATGACTAGATG
GAACATCCAGGGCGGTCCCTTAGGTGTGAAGATTGTACGACATTAGCTCCCTTTCTTGTC
GGCATTCCTAGCGCCCTAAAGCAGCAGAGGGGTCTCCAACTAGAGGAAAATTGTCCCCTG
GCATCTGGGATTGGCTTTTACCAGTACTTGTCGCTACAGAAAACTATAAATANTTCTCAG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               376-599, - strand, RNAz p=0.998984
               

               
               699-816, + strand, RNAz p=0.841614

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               376-599, - strand, RNAz p=0.998984
               

               
               699-816, + strand, RNAz p=0.841614

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               513-570, + strand, RNAmicro p=0.998225

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               513-570, + strand, RNAmicro p=0.998225

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               376-591, BP221226 Sugano cDNA library, colon Homo sapiens cDNA clone 
(dbj|BP221226.1|), blast E-value=0, identity=88.94% 
               

               
               376-591, BP221530 Sugano cDNA library, colon Homo sapiens cDNA clone 
(dbj|BP221530.1|), blast E-value=0.00000000000006, identity=98.04% 
               

               
               376-508, BP304381 Sugano cDNA library, macrophage Homo sapiens cDNA clone 
(dbj|BP304381.1|), blast E-value=0, identity=93.23% 
               

               
               376-589, BP306737 Sugano cDNA library, macrophage Homo sapiens cDNA clone 
(dbj|BP306737.1|), blast E-value=0.000000000001, identity=97.96% 
               

               
               376-508, DB000666 TBAES2 Homo sapiens cDNA clone TBAES2002400 5', mRNA 
(dbj|DB000666.1|), blast E-value=0, identity=93.23% 
               

               
               376-591, HESC3_4_F12.g1_A036 NIH_MGC_260 Homo sapiens cDNA clone 
(gb|CX781330.1|), blast E-value=0.00000000000006, identity=98.04%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               376-591, BP221226 Sugano cDNA library, colon Homo sapiens cDNA clone 
(dbj|BP221226.1|), blast E-value=0, identity=88.94% 
               

               
               376-591, BP221530 Sugano cDNA library, colon Homo sapiens cDNA clone 
(dbj|BP221530.1|), blast E-value=0.00000000000006, identity=98.04% 
               

               
               376-508, BP304381 Sugano cDNA library, macrophage Homo sapiens cDNA clone 
(dbj|BP304381.1|), blast E-value=0, identity=93.23% 
               

               
               376-589, BP306737 Sugano cDNA library, macrophage Homo sapiens cDNA clone 
(dbj|BP306737.1|), blast E-value=0.000000000001, identity=97.96% 
               

               
               376-508, DB000666 TBAES2 Homo sapiens cDNA clone TBAES2002400 5', mRNA 
(dbj|DB000666.1|), blast E-value=0, identity=93.23% 
               

               
               376-591, HESC3_4_F12.g1_A036 NIH_MGC_260 Homo sapiens cDNA clone 
(gb|CX781330.1|), blast E-value=0.00000000000006, identity=98.04%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_017423, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_017423, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               104-884, gnl|bosTau2|chr8 (3177060-3177851)
               

               
               104-884, gnl|Hg17|chr4 (174617456-174618254)
               

               
               104-884, gnl|Mm7|chr8 (55909037-55908216)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               104-884, gnl|bosTau2|chr8 (3177060-3177851)
               

               
               104-884, gnl|Hg17|chr4 (174617456-174618254)
               

               
               104-884, gnl|Mm7|chr8 (55909037-55908216)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               liv (0.146284)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)

	376-599, - strand, RNAz p=0.998984
	699-816, + strand, RNAz p=0.841614

	376-591, BP221226 Sugano cDNA library, colon Homo sapiens cDNA clone (dbj\|BP221226.1\|), blast E-value=0, identity=88.94%
	376-591, BP221530 Sugano cDNA library, colon Homo sapiens cDNA clone (dbj\|BP221530.1\|), blast E-value=0.00000000000006, identity=98.04%
	376-508, BP304381 Sugano cDNA library, macrophage Homo sapiens cDNA clone (dbj\|BP304381.1\|), blast E-value=0, identity=93.23%
	376-589, BP306737 Sugano cDNA library, macrophage Homo sapiens cDNA clone (dbj\|BP306737.1\|), blast E-value=0.000000000001, identity=97.96%
	376-508, DB000666 TBAES2 Homo sapiens cDNA clone TBAES2002400 5', mRNA (dbj\|DB000666.1\|), blast E-value=0, identity=93.23%
	376-591, HESC3_4_F12.g1_A036 NIH_MGC_260 Homo sapiens cDNA clone (gb\|CX781330.1\|), blast E-value=0.00000000000006, identity=98.04%

	104-884, gnl\|bosTau2\|chr8 (3177060-3177851)
	104-884, gnl\|Hg17\|chr4 (174617456-174618254)
	104-884, gnl\|Mm7\|chr8 (55909037-55908216)