Non-Coding RNA Search

Ss1.1-uFN-UNL-P-FN-bp-f-06-0-UNL.s1.3

Sequence:


               
               GCTGGTTGGAAGAGGTATCCAAGAGCGTCCGGGCTCAGCAGCCCCAGGCCTCAGCTGCCC
CTCTGCAGCCAGTTCTCCAGCCTCCTCCACCTACCGCCATCTCCCAGCCAGCGCCACCTT
TCCAAGGAAATGCATTCCTCACCTCTCAGCCCATGCCAGTGGGTGTGGTCCCACCCCTGC
AGCCAGCCTTTGTCCCTGCCCAGTCCTATCCTGTGGCTAATGGGATGCCCTATCCAGCCC
CTAATGTGCCTGTGGTAGGCATCACTCCCTCCCAGATGGTTGCCAACGTGTTTGGCACTG
CAGGCCACCCCCAGGCTGCCCAGCCCCATCAGTCTCCCAGCCTGGTCAAGCAGCAGACAT
TCCCACAGTACGAGACAAGCAGTGCTACTGCCAGTCCCTTCTTTAAGCCACCTGCTCAGC
ACCTCAACGGTTCTGCAGCTTTCAATGGTGTAGACGATGGCAGGTTGGCTTCAGGAGACA
AGCGCACAGAGGTGCCTGCAGGCACCTGTCCCGTGGATCCTTTCGAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGGTTGGAAGAGGTATCCAAGAGCGTCCGGGCTCAGCAGCCCCAGGCCTCAGCTGCCC
CTCTGCAGCCAGTTCTCCAGCCTCCTCCACCTACCGCCATCTCCCAGCCAGCGCCACCTT
TCCAAGGAAATGCATTCCTCACCTCTCAGCCCATGCCAGTGGGTGTGGTCCCACCCCTGC
AGCCAGCCTTTGTCCCTGCCCAGTCCTATCCTGTGGCTAATGGGATGCCCTATCCAGCCC
CTAATGTGCCTGTGGTAGGCATCACTCCCTCCCAGATGGTTGCCAACGTGTTTGGCACTG
CAGGCCACCCCCAGGCTGCCCAGCCCCATCAGTCTCCCAGCCTGGTCAAGCAGCAGACAT
TCCCACAGTACGAGACAAGCAGTGCTACTGCCAGTCCCTTCTTTAAGCCACCTGCTCAGC
ACCTCAACGGTTCTGCAGCTTTCAATGGTGTAGACGATGGCAGGTTGGCTTCAGGAGACA
AGCGCACAGAGGTGCCTGCAGGCACCTGTCCCGTGGATCCTTTCGAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|21707193|gb|AAH33824.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21707193|gb|AAH33824.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-400, - strand, RNAz p=0.747183

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-400, - strand, RNAz p=0.747183

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-526, gnl|bosTau2|chr10 (59798633-59798108)
               

               
               1-526, gnl|Hg17|chr14 (72813670-72813145)
               

               
               1-526, gnl|Mm7|chr12 (81792107-81791582)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-526, gnl|bosTau2|chr10 (59798633-59798108)
               

               
               1-526, gnl|Hg17|chr14 (72813670-72813145)
               

               
               1-526, gnl|Mm7|chr12 (81792107-81791582)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               jej (0.197844)
               

               
               eje (0.0988338)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.197844)
               

               
               eje (0.0988338)

	1-526, gnl\|bosTau2\|chr10 (59798633-59798108)
	1-526, gnl\|Hg17\|chr14 (72813670-72813145)
	1-526, gnl\|Mm7\|chr12 (81792107-81791582)