Non-Coding RNA Search

Ss1.1-uFN-UNL-P-FN-bq-g-09-0-UNL.s1.3

Sequence:


               
               GAGAGGTGGTGGACCAGAAGACGGGGTGAAACATGAGCTCGCCGGAGGTACAGTTTTTCC
AGGTGCTTAAAGCCTCCCTTATGACCTTCAGGCCTAGGTCATCAAGATGCACAGCGTGAG
ACAGAAGCTCCTCTGGGTCCCGCAGTCGGTGACATGAGGCCGCTTTGCTGGTCCACACAT
CCACAGGCTCCATCCAAGCCCAGCTGCCACCTACACAGCTCTGTGGGCTGCCCACCCACA
GAGGACCTTCCATCTGACACTCCTTGCCCCCTGCTCACCAGCCGTGTCGTGGCCAGTTTG
CGATGGGGTGGCTGTAGTGGCCAAGCCTATTGGAAACTGTGGGTGTGGCTGGAAAAGGAG
GGACTCGGGCCAGGTGTCCTCACTGCCAGCAAGGCTGCAGCCACAGTGGTGCTGGTTGTA
CACAGGCACCTCCTCCTTCCATCCAAGGGCACTGAGGATTTTGTCTGCATTGCTAAGTAA
GCAGGGAGAACAGAAGCTTTTCCTGTGTCTAATTTTAGGATTTCAGTGAGATCTCTTTCA
TCTTATTCAGGAAAAAACAGAGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAGGTGGTGGACCAGAAGACGGGGTGAAACATGAGCTCGCCGGAGGTACAGTTTTTCC
AGGTGCTTAAAGCCTCCCTTATGACCTTCAGGCCTAGGTCATCAAGATGCACAGCGTGAG
ACAGAAGCTCCTCTGGGTCCCGCAGTCGGTGACATGAGGCCGCTTTGCTGGTCCACACAT
CCACAGGCTCCATCCAAGCCCAGCTGCCACCTACACAGCTCTGTGGGCTGCCCACCCACA
GAGGACCTTCCATCTGACACTCCTTGCCCCCTGCTCACCAGCCGTGTCGTGGCCAGTTTG
CGATGGGGTGGCTGTAGTGGCCAAGCCTATTGGAAACTGTGGGTGTGGCTGGAAAAGGAG
GGACTCGGGCCAGGTGTCCTCACTGCCAGCAAGGCTGCAGCCACAGTGGTGCTGGTTGTA
CACAGGCACCTCCTCCTTCCATCCAAGGGCACTGAGGATTTTGTCTGCATTGCTAAGTAA
GCAGGGAGAACAGAAGCTTTTCCTGTGTCTAATTTTAGGATTTCAGTGAGATCTCTTTCA
TCTTATTCAGGAAAAAACAGAGGG

Predicted RNA structure(s): 6 entry(ies)

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Predicted RNA structure(s): 6 entry(ies)

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               39-259, - strand, RNAz p=0.761606
               

               
               56-148, - strand, RNAz p=0.998063
               

               
               66-156, - strand, RNAz p=0.876596
               

               
               270-419, - strand, RNAz p=0.997683
               

               
               312-466, - strand, RNAz p=0.877177
               

               
               375-489, - strand, RNAz p=0.754619

Predicted RNA structure(s): 6 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-259, - strand, RNAz p=0.761606
               

               
               56-148, - strand, RNAz p=0.998063
               

               
               66-156, - strand, RNAz p=0.876596
               

               
               270-419, - strand, RNAz p=0.997683
               

               
               312-466, - strand, RNAz p=0.877177
               

               
               375-489, - strand, RNAz p=0.754619

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               276-403, + strand, RNAmicro p=0.999505
               

               
               62-147, + strand, RNAmicro p=0.996398

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               276-403, + strand, RNAmicro p=0.999505
               

               
               62-147, + strand, RNAmicro p=0.996398

Similar Transcript(s): 1 entry(ies)

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Similar Transcript(s): 1 entry(ies)

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               56-148, DB791577 full-length enriched swine cDNA library, adult immature 
(dbj|DB791577.1|), blast E-value=8.00001e-42, identity=98.92%

Similar Transcript(s): 1 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               56-148, DB791577 full-length enriched swine cDNA library, adult immature 
(dbj|DB791577.1|), blast E-value=8.00001e-42, identity=98.92%

Aligned organism(s): 23 entry(ies)

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Aligned organism(s): 23 entry(ies)

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               1-564, gnl|bosTau2|chr22 (40265213-40264637)
               

               
               1-564, gnl|canFam2|chr20 (44533067-44532687)
               

               
               1-564, gnl|canFam2|chr20 (44533066-44532687)
               

               
               1-564, gnl|dasNov1|scaffold_9324 (63863-64252)
               

               
               1-564, gnl|dasNov1|scaffold_9324 (63864-64252)
               

               
               1-564, gnl|hg17|chr3 (47360465-47360859)
               

               
               1-564, gnl|Hg17|chr3 (47360510-47361080)
               

               
               1-564, gnl|hg17|chrX (133812269-133812660)
               

               
               1-564, gnl|loxAfr1|scaffold_145136 (4786-5168)
               

               
               1-564, gnl|loxAfr1|scaffold_145136 (4787-5168)
               

               
               1-564, gnl|mm7|chr9 (110126544-110126166)
               

               
               1-564, gnl|mm7|chr9 (110126543-110126166)
               

               
               1-564, gnl|Mm7|chr9 (110126495-110125941)
               

               
               1-564, gnl|monDom2|scaffold_5 (81839287-81839687)
               

               
               1-564, gnl|monDom2|scaffold_5 (81839290-81839688)
               

               
               1-564, gnl|oryCun1|scaffold_199626 (672-1064)
               

               
               1-564, gnl|oryCun1|scaffold_199626 (673-1064)
               

               
               1-564, gnl|panTro1|chr2 (48821856-48822250)
               

               
               1-564, gnl|panTro1|chrX (138425759-138426150)
               

               
               1-564, gnl|rheMac2|chr2 (89191174-89190779)
               

               
               1-564, gnl|rheMac2|chrX (133181896-133182302)
               

               
               1-564, gnl|rn3|chr8 (114824167-114823774)
               

               
               1-564, gnl|rn3|chr8 (114824166-114823774)

Aligned organism(s): 23 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-564, gnl|bosTau2|chr22 (40265213-40264637)
               

               
               1-564, gnl|canFam2|chr20 (44533067-44532687)
               

               
               1-564, gnl|canFam2|chr20 (44533066-44532687)
               

               
               1-564, gnl|dasNov1|scaffold_9324 (63863-64252)
               

               
               1-564, gnl|dasNov1|scaffold_9324 (63864-64252)
               

               
               1-564, gnl|hg17|chr3 (47360465-47360859)
               

               
               1-564, gnl|Hg17|chr3 (47360510-47361080)
               

               
               1-564, gnl|hg17|chrX (133812269-133812660)
               

               
               1-564, gnl|loxAfr1|scaffold_145136 (4786-5168)
               

               
               1-564, gnl|loxAfr1|scaffold_145136 (4787-5168)
               

               
               1-564, gnl|mm7|chr9 (110126544-110126166)
               

               
               1-564, gnl|mm7|chr9 (110126543-110126166)
               

               
               1-564, gnl|Mm7|chr9 (110126495-110125941)
               

               
               1-564, gnl|monDom2|scaffold_5 (81839287-81839687)
               

               
               1-564, gnl|monDom2|scaffold_5 (81839290-81839688)
               

               
               1-564, gnl|oryCun1|scaffold_199626 (672-1064)
               

               
               1-564, gnl|oryCun1|scaffold_199626 (673-1064)
               

               
               1-564, gnl|panTro1|chr2 (48821856-48822250)
               

               
               1-564, gnl|panTro1|chrX (138425759-138426150)
               

               
               1-564, gnl|rheMac2|chr2 (89191174-89190779)
               

               
               1-564, gnl|rheMac2|chrX (133181896-133182302)
               

               
               1-564, gnl|rn3|chr8 (114824167-114823774)
               

               
               1-564, gnl|rn3|chr8 (114824166-114823774)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               mcp (0.170648)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)

	39-259, - strand, RNAz p=0.761606
	56-148, - strand, RNAz p=0.998063
	66-156, - strand, RNAz p=0.876596
	270-419, - strand, RNAz p=0.997683
	312-466, - strand, RNAz p=0.877177
	375-489, - strand, RNAz p=0.754619

	276-403, + strand, RNAmicro p=0.999505
	62-147, + strand, RNAmicro p=0.996398

	1-564, gnl\|bosTau2\|chr22 (40265213-40264637)
	1-564, gnl\|canFam2\|chr20 (44533067-44532687)
	1-564, gnl\|canFam2\|chr20 (44533066-44532687)
	1-564, gnl\|dasNov1\|scaffold_9324 (63863-64252)
	1-564, gnl\|dasNov1\|scaffold_9324 (63864-64252)
	1-564, gnl\|hg17\|chr3 (47360465-47360859)
	1-564, gnl\|Hg17\|chr3 (47360510-47361080)
	1-564, gnl\|hg17\|chrX (133812269-133812660)
	1-564, gnl\|loxAfr1\|scaffold_145136 (4786-5168)
	1-564, gnl\|loxAfr1\|scaffold_145136 (4787-5168)
	1-564, gnl\|mm7\|chr9 (110126544-110126166)
	1-564, gnl\|mm7\|chr9 (110126543-110126166)
	1-564, gnl\|Mm7\|chr9 (110126495-110125941)
	1-564, gnl\|monDom2\|scaffold_5 (81839287-81839687)
	1-564, gnl\|monDom2\|scaffold_5 (81839290-81839688)
	1-564, gnl\|oryCun1\|scaffold_199626 (672-1064)
	1-564, gnl\|oryCun1\|scaffold_199626 (673-1064)
	1-564, gnl\|panTro1\|chr2 (48821856-48822250)
	1-564, gnl\|panTro1\|chrX (138425759-138426150)
	1-564, gnl\|rheMac2\|chr2 (89191174-89190779)
	1-564, gnl\|rheMac2\|chrX (133181896-133182302)
	1-564, gnl\|rn3\|chr8 (114824167-114823774)
	1-564, gnl\|rn3\|chr8 (114824166-114823774)