Ss1.1-uFN-UNL-P-FN-bu-a-09-0-UNL.s1.3
|
CTGAGTTTCTCTGCCAGCATGAGTGTGTGAACCAACCTGGCACGTACTTCTGCTCCTGCC
CGGCTGGCTACATCCTGATGGATGACAACCGAAGCTGCCAGGATATCAACGAATGTGAGC
ACAGAAACCACACGTGCATCCTGCAGCAGACCTGCTACAATTTGCAAGGGGGCTTCAAAT
GCATTGACCCCATCCGCTGCGAGGAGCCTTATCTGCGGATCAGCGATAACCGCTGTATGT
GTCCCGCTGAAAACCCTGGCTGCAGAGACCAACCCTTCACCATCTTGTACCGGGATATGG
ATGTGGTGTCGGGCCGCTCTGTTCCTGCTGACATCTTCCAAATGCAGGCGACGACCCGCT
ACCCTGGGGCCTATTACATTTTCCAGATCAAGTCTGGGAATGAGGGCAGAGAATTCTATA
TGCGGCAAACGGGCCCCATCAGTGCCACCCTGGTGATGACACGTCCCATCAAAGGGCCGA
GGGACATACAGCTGGACTTGGAAATGATCACGGTCAACACTGTCATCAACTTCAGAGGCA
GCTCCGTGATCCGACTGCGGATATACGTGTCTCAGTACCCGTTCTGAGCCCCGGGCTGGC
GCTGCCCACACTGCCTCTCAGCAGCACCAGGGACAGGAGAACCCAGAGAGAGAACGAGAG
CGCGACGGACGCGGCGCCTTGCCTGCCACCCGAGGAGTCAGCCCCGAGTCCCGGCCGCGC
CTGTGTTCCTGTTGACCCGTCGCTCCGAAGGTCGCGCTTCCCTGGTTCCTATGACGCAGT
GATGACAAGCATTCTCACTGGCCCCTGACCTGAGATCGACGGTGATTTTGCAAGGCCTTC
CGTTTATTTCCATATTTCTCAAAGAAAATAGGTTAGGTTTGCTGGGGTCTGAGTCCACGT
TCAAAGACTGTGAACCGCTTCCGCTCACCTCCTCCTGCCTTCCTTCTGTCTCTCACTGAT
TGCTTCTTCGCCAAGGCCCAGAGAGCTCACGGGCTCGCTGGCTTAGCTAGTTCTGCTTCT
TGCATGTACAGAGAAGGCGGTGGAAAGAAACCACAGCAGGATCTAAGGGTTTGTAAAGAG
TCTATTTCGAAGCCATGTCTGGTATTTTCAGCCATAAGAGAAGTTGTAGTTGTCCTTAAA
GTTGTATACCTGTTTAATCCTTTCTTGCTCATTTTGAGTATTTTGTTTTTAATCAGTGGT
AGAATTCCTTCAAAAGGCCTTAAGGCACATGTTATGTTCTGTCTTCCCAAGCCCAGTCTC
CTCTCCATTTTAGCTCAACATTTTCTGTGCGAACCCTTCATCACGCTTTCTTTAGAATTT
TTGCCCAACTGGGTTGGAAGGCAGAGGTCTCCAAACTGATTAAATATTTGAAGAGAAAAA
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTGAGTTTCTCTGCCAGCATGAGTGTGTGAACCAACCTGGCACGTACTTCTGCTCCTGCC
CGGCTGGCTACATCCTGATGGATGACAACCGAAGCTGCCAGGATATCAACGAATGTGAGC
ACAGAAACCACACGTGCATCCTGCAGCAGACCTGCTACAATTTGCAAGGGGGCTTCAAAT
GCATTGACCCCATCCGCTGCGAGGAGCCTTATCTGCGGATCAGCGATAACCGCTGTATGT
GTCCCGCTGAAAACCCTGGCTGCAGAGACCAACCCTTCACCATCTTGTACCGGGATATGG
ATGTGGTGTCGGGCCGCTCTGTTCCTGCTGACATCTTCCAAATGCAGGCGACGACCCGCT
ACCCTGGGGCCTATTACATTTTCCAGATCAAGTCTGGGAATGAGGGCAGAGAATTCTATA
TGCGGCAAACGGGCCCCATCAGTGCCACCCTGGTGATGACACGTCCCATCAAAGGGCCGA
GGGACATACAGCTGGACTTGGAAATGATCACGGTCAACACTGTCATCAACTTCAGAGGCA
GCTCCGTGATCCGACTGCGGATATACGTGTCTCAGTACCCGTTCTGAGCCCCGGGCTGGC
GCTGCCCACACTGCCTCTCAGCAGCACCAGGGACAGGAGAACCCAGAGAGAGAACGAGAG
CGCGACGGACGCGGCGCCTTGCCTGCCACCCGAGGAGTCAGCCCCGAGTCCCGGCCGCGC
CTGTGTTCCTGTTGACCCGTCGCTCCGAAGGTCGCGCTTCCCTGGTTCCTATGACGCAGT
GATGACAAGCATTCTCACTGGCCCCTGACCTGAGATCGACGGTGATTTTGCAAGGCCTTC
CGTTTATTTCCATATTTCTCAAAGAAAATAGGTTAGGTTTGCTGGGGTCTGAGTCCACGT
TCAAAGACTGTGAACCGCTTCCGCTCACCTCCTCCTGCCTTCCTTCTGTCTCTCACTGAT
TGCTTCTTCGCCAAGGCCCAGAGAGCTCACGGGCTCGCTGGCTTAGCTAGTTCTGCTTCT
TGCATGTACAGAGAAGGCGGTGGAAAGAAACCACAGCAGGATCTAAGGGTTTGTAAAGAG
TCTATTTCGAAGCCATGTCTGGTATTTTCAGCCATAAGAGAAGTTGTAGTTGTCCTTAAA
GTTGTATACCTGTTTAATCCTTTCTTGCTCATTTTGAGTATTTTGTTTTTAATCAGTGGT
AGAATTCCTTCAAAAGGCCTTAAGGCACATGTTATGTTCTGTCTTCCCAAGCCCAGTCTC
CTCTCCATTTTAGCTCAACATTTTCTGTGCGAACCCTTCATCACGCTTTCTTTAGAATTT
TTGCCCAACTGGGTTGGAAGGCAGAGGTCTCCAAACTGATTAAATATTTGAAGAGAAAAA
AAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
103-205, - strand, RNAmicro p=0.93803 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
103-205, - strand, RNAmicro p=0.93803 |
|
102-229, gnl|bosTau2|chr21 (36275425-36275298) |
|
102-229, gnl|canFam2|chr8 (4170997-4171147) |
|
102-229, gnl|danRer3|chr13 (34567215-34567069) |
|
102-229, gnl|dasNov1|scaffold_49898 (6350-6201) |
|
102-229, gnl|echTel1|scaffold_30553 (4491-4640) |
|
102-229, gnl|fr1|chrUn (186385380-186385234) |
|
102-229, gnl|galGal2|chr5 (41287074-41287228) |
|
102-229, gnl|hg17|chr14 (91417384-91417534) |
|
102-229, gnl|Hg17|chr14 (91417516-91417389) |
|
102-229, gnl|loxAfr1|scaffold_27222 (34196-34047) |
|
102-229, gnl|mm7|chr12 (99256048-99256198) |
|
102-229, gnl|Mm7|chr12 (99256180-99256053) |
|
102-229, gnl|monDom2|scaffold_8 (29669176-29669324) |
|
102-229, gnl|oryCun1|scaffold_187642 (29179-29329) |
|
102-229, gnl|panTro1|chr15 (91792756-91792906) |
|
102-229, gnl|rheMac2|chr7 (155094776-155094926) |
|
102-229, gnl|rn3|chr6 (126033635-126033784) |
|
102-229, gnl|tetNig1|chr10 (11532407-11532261) |
|
102-229, gnl|xenTro1|scaffold_22 (2730276-2730425) |
| |
|
831-1376, gnl|bosTau2|chr20 (7691537-7690993) |
|
831-1376, gnl|Hg17|chr14 (91406055-91405508) |
|
831-1376, gnl|Mm7|chr12 (99245833-99245289) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
102-229, gnl|bosTau2|chr21 (36275425-36275298) |
|
102-229, gnl|canFam2|chr8 (4170997-4171147) |
|
102-229, gnl|danRer3|chr13 (34567215-34567069) |
|
102-229, gnl|dasNov1|scaffold_49898 (6350-6201) |
|
102-229, gnl|echTel1|scaffold_30553 (4491-4640) |
|
102-229, gnl|fr1|chrUn (186385380-186385234) |
|
102-229, gnl|galGal2|chr5 (41287074-41287228) |
|
102-229, gnl|hg17|chr14 (91417384-91417534) |
|
102-229, gnl|Hg17|chr14 (91417516-91417389) |
|
102-229, gnl|loxAfr1|scaffold_27222 (34196-34047) |
|
102-229, gnl|mm7|chr12 (99256048-99256198) |
|
102-229, gnl|Mm7|chr12 (99256180-99256053) |
|
102-229, gnl|monDom2|scaffold_8 (29669176-29669324) |
|
102-229, gnl|oryCun1|scaffold_187642 (29179-29329) |
|
102-229, gnl|panTro1|chr15 (91792756-91792906) |
|
102-229, gnl|rheMac2|chr7 (155094776-155094926) |
|
102-229, gnl|rn3|chr6 (126033635-126033784) |
|
102-229, gnl|tetNig1|chr10 (11532407-11532261) |
|
102-229, gnl|xenTro1|scaffold_22 (2730276-2730425) |
| |
|
831-1376, gnl|bosTau2|chr20 (7691537-7690993) |
|
831-1376, gnl|Hg17|chr14 (91406055-91405508) |
|
831-1376, gnl|Mm7|chr12 (99245833-99245289) |
|
hlv (0.417769) |
|
cov (0.396458) |
|
elu (0.385356) |
|
che (0.272628) |
|
ese (0.253004) |
|
mgp (0.230681) |
|
cty (0.20816) |
|
nlu (0.191681) |
|
ton (0.1755) |
|
mcp (0.170648) |
|
bla (0.124347) |
|
cly (0.120642) |
|
eru (0.120048) |
|
med (0.116252) |
|
eje (0.0988338) |
|
hlv (0.417769) |
|
cov (0.396458) |
|
elu (0.385356) |
|
che (0.272628) |
|
ese (0.253004) |
|
mgp (0.230681) |
|
cty (0.20816) |
|
nlu (0.191681) |
|
ton (0.1755) |
|
mcp (0.170648) |
|
bla (0.124347) |
|
cly (0.120642) |
|
eru (0.120048) |
|
med (0.116252) |
|
eje (0.0988338) |
