Non-Coding RNA Search

Ss1.1-uFN-UNL-P-FN-bu-g-01-0-UNL.s1.3

Sequence:


               
               TTCACCAATAAATAAGTTCCTTCAGTGCCAGAGGGGCTATATCCTGTCGTAAAGGCATAT
TTGTGATTCCCTGTCAGCCCGGTCTTGGTGCTGACCTAACTGAATTCCAAAAGACCTGCC
TTGGCAGCAGCCTGCTTCCTTCCAAAAGAGAAGAAATTGAGCCAGAGCCCAAGAGAACTG
ATTGTTTATTCCATAGAAGCATTAGAAAACAGGAAACCCTGGACTGCCCGGGAGTCTGAG
ATGTCAGTTGATGACTTTTTAAAAGGTCAGCGGAGGGTAACAGAGAGATGAGCCAGAATT
TCTGCCTGTCTTTGTTAAATGGGAATACATATTACAGAAAACATGGCGTGTGACCCCTCT
GGAGCCCCAGATTTGGAAGGGTTTTGGAGAAGACAGTTGGGTTGATTCTGATGAGCAGTC
AGCTTTTGTTTTCTCCATCTAAGCCTCTTTCTCCTGTCCAGGGGTCCCAGTGGATAGTCT
TTCAAGATCGACCTCAGAGGCCTTGCCGGGGCCCTACCCCTCCCATCTGCTCCATTCTTA
GGCGTCAGACTTAGAAGTGGGACTTGGCAACCCTCCCGTGCCCCATTCCTCACCACAGTC
AACTGTGACTGTTTCTGATGACCTGGAGATTCAACAACAGAGAGAAGGTTCTTGCTCTAA
GCTGGCTTCTCTTTGGCCCTGTTGAAGTTGTGCACCTTTATTCAAAGCTTCAGAAGTGAC
CTGGTCAGTCTAGATCTTCCCAGTCCTGCTGTAGTGCCATCAGCCACAGGAGTGGGGATG
CTCCGGTGTCTGGGAGTCCTGAGGGCACACCCATCAGGCACACAGGCCCTGCATGACCTG
ACCTCACACTGTTGTGCTGTGACCAGCGTCCCTGAGCTGCTCTCCCAAGGCTGCAGCTCA
CACCAGGTTTCTGAATGAGAGTCCCTGCTGGTTAAGACTTTTGGTTCCACTTGTTTCCTT
GGAGTTGTTTTTCCAGGAGCATAACGTACATTAAAGTCTTTGAGTTGAGTCTAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCACCAATAAATAAGTTCCTTCAGTGCCAGAGGGGCTATATCCTGTCGTAAAGGCATAT
TTGTGATTCCCTGTCAGCCCGGTCTTGGTGCTGACCTAACTGAATTCCAAAAGACCTGCC
TTGGCAGCAGCCTGCTTCCTTCCAAAAGAGAAGAAATTGAGCCAGAGCCCAAGAGAACTG
ATTGTTTATTCCATAGAAGCATTAGAAAACAGGAAACCCTGGACTGCCCGGGAGTCTGAG
ATGTCAGTTGATGACTTTTTAAAAGGTCAGCGGAGGGTAACAGAGAGATGAGCCAGAATT
TCTGCCTGTCTTTGTTAAATGGGAATACATATTACAGAAAACATGGCGTGTGACCCCTCT
GGAGCCCCAGATTTGGAAGGGTTTTGGAGAAGACAGTTGGGTTGATTCTGATGAGCAGTC
AGCTTTTGTTTTCTCCATCTAAGCCTCTTTCTCCTGTCCAGGGGTCCCAGTGGATAGTCT
TTCAAGATCGACCTCAGAGGCCTTGCCGGGGCCCTACCCCTCCCATCTGCTCCATTCTTA
GGCGTCAGACTTAGAAGTGGGACTTGGCAACCCTCCCGTGCCCCATTCCTCACCACAGTC
AACTGTGACTGTTTCTGATGACCTGGAGATTCAACAACAGAGAGAAGGTTCTTGCTCTAA
GCTGGCTTCTCTTTGGCCCTGTTGAAGTTGTGCACCTTTATTCAAAGCTTCAGAAGTGAC
CTGGTCAGTCTAGATCTTCCCAGTCCTGCTGTAGTGCCATCAGCCACAGGAGTGGGGATG
CTCCGGTGTCTGGGAGTCCTGAGGGCACACCCATCAGGCACACAGGCCCTGCATGACCTG
ACCTCACACTGTTGTGCTGTGACCAGCGTCCCTGAGCTGCTCTCCCAAGGCTGCAGCTCA
CACCAGGTTTCTGAATGAGAGTCCCTGCTGGTTAAGACTTTTGGTTCCACTTGTTTCCTT
GGAGTTGTTTTTCCAGGAGCATAACGTACATTAAAGTCTTTGAGTTGAGTCTAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               109-205, - strand, RNAz p=0.637619
               

               
               890-1009, + strand, RNAz p=0.714525

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               109-205, - strand, RNAz p=0.637619
               

               
               890-1009, + strand, RNAz p=0.714525

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_015511, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_015511, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1009, gnl|bosTau2|chr13 (44391513-44392527)
               

               
               1-1009, gnl|Hg17|chr20 (34307223-34308265)
               

               
               1-1009, gnl|Mm7|chr2 (156308022-156309011)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1009, gnl|bosTau2|chr13 (44391513-44392527)
               

               
               1-1009, gnl|Hg17|chr20 (34307223-34308265)
               

               
               1-1009, gnl|Mm7|chr2 (156308022-156309011)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               hyp (0.285673)
               

               
               ece (0.229305)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               ebs (0.118301)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.285673)
               

               
               ece (0.229305)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               ebs (0.118301)

	109-205, - strand, RNAz p=0.637619
	890-1009, + strand, RNAz p=0.714525

	1-1009, gnl\|bosTau2\|chr13 (44391513-44392527)
	1-1009, gnl\|Hg17\|chr20 (34307223-34308265)
	1-1009, gnl\|Mm7\|chr2 (156308022-156309011)

	hyp (0.285673)
	ece (0.229305)
	fat (0.147427)
	spl (0.143184)
	hlv (0.139256)
	pla (0.133672)
	cov (0.132153)
	ebs (0.118301)