Non-Coding RNA Search

Ss1.1-uFN-UNL-P-FN-bv-f-10-0-UNL.s1.3

Sequence:


               
               TCACAAGAATTCCTGCTTTAATTAACTGACCTGTGCGAGCCATTCTTCCTTCACCCTCAG
AACAATGGGGGAAGAAGGCTTCCTGTCATGGGGCCAGGTTTCCAGGATGAGCTGCCAAAA
GCCAGACTGGAAGCCAGTGAGGATTTATGAAGGAAGACCTCAGTGTCCCTGGGGGCCCTG
GTTAGCAAGCCCCCCATCTCCATCCAAACTGGGTAGGATGCAGGGAGCCCCTGGCCTCCG
ACACCCGCCTCAGGAATGATCTGAGTGATCCACCGAAGACAAAACCCATGGGCAGAAAGA
GCAGGCTTGGTGGCTTCAGAGGTTCCCCTGACAAGTGTGCCAGACCTGAAACCCGACAGA
GCAGGGGGTCAGTTGGCAGACGGCGCCCAGCACGCAGCCAGGGAGTTCAGGAGCCGAACA
CACCAGATCCCTGGTCGACAGAGGAAGGTGAATGAACAGGACTGAACGGTTCCACATCCA
CGTAAACGCTGCACCCCTTCACCTCTCACCCCGGAACCAGAAAGGACACAAACACAACTC
ACGCCACGGGGGGATTCTGTGTATTTTTTAGCACCCATGTATTGAAAACCTAGACAGCAA
GTGGTCGCCTCATTCTATGCCTGTCAAAAGCTGCACTGAATACAGAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCACAAGAATTCCTGCTTTAATTAACTGACCTGTGCGAGCCATTCTTCCTTCACCCTCAG
AACAATGGGGGAAGAAGGCTTCCTGTCATGGGGCCAGGTTTCCAGGATGAGCTGCCAAAA
GCCAGACTGGAAGCCAGTGAGGATTTATGAAGGAAGACCTCAGTGTCCCTGGGGGCCCTG
GTTAGCAAGCCCCCCATCTCCATCCAAACTGGGTAGGATGCAGGGAGCCCCTGGCCTCCG
ACACCCGCCTCAGGAATGATCTGAGTGATCCACCGAAGACAAAACCCATGGGCAGAAAGA
GCAGGCTTGGTGGCTTCAGAGGTTCCCCTGACAAGTGTGCCAGACCTGAAACCCGACAGA
GCAGGGGGTCAGTTGGCAGACGGCGCCCAGCACGCAGCCAGGGAGTTCAGGAGCCGAACA
CACCAGATCCCTGGTCGACAGAGGAAGGTGAATGAACAGGACTGAACGGTTCCACATCCA
CGTAAACGCTGCACCCCTTCACCTCTCACCCCGGAACCAGAAAGGACACAAACACAACTC
ACGCCACGGGGGGATTCTGTGTATTTTTTAGCACCCATGTATTGAAAACCTAGACAGCAA
GTGGTCGCCTCATTCTATGCCTGTCAAAAGCTGCACTGAATACAGAGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               87-203, - strand, RNAz p=0.931075

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               87-203, - strand, RNAz p=0.931075

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               4-203, gnl|bosTau2|chr4 (54215126-54215326)
               

               
               4-203, gnl|canFam2|chr16 (15949218-15948826)
               

               
               4-203, gnl|dasNov1|scaffold_4030 (29030-28594)
               

               
               4-203, gnl|hg17|chr7 (134307035-134307422)
               

               
               4-203, gnl|Hg17|chr7 (134307266-134307513)
               

               
               4-203, gnl|mm7|chr6 (34804355-34804669)
               

               
               4-203, gnl|oryCun1|scaffold_181348 (4102-4348)
               

               
               4-203, gnl|panTro1|chr6 (136998874-136999261)
               

               
               4-203, gnl|rheMac2|chr3 (172646138-172646526)
               

               
               4-203, gnl|rn3|chr4 (62535212-62535542)
               


               
               252-645, gnl|bosTau2|chr4 (54215351-54215740)
               

               
               252-645, gnl|Hg17|chr7 (134307540-134307893)
               

               
               252-645, gnl|Mm7|chr6 (34804731-34805059)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-203, gnl|bosTau2|chr4 (54215126-54215326)
               

               
               4-203, gnl|canFam2|chr16 (15949218-15948826)
               

               
               4-203, gnl|dasNov1|scaffold_4030 (29030-28594)
               

               
               4-203, gnl|hg17|chr7 (134307035-134307422)
               

               
               4-203, gnl|Hg17|chr7 (134307266-134307513)
               

               
               4-203, gnl|mm7|chr6 (34804355-34804669)
               

               
               4-203, gnl|oryCun1|scaffold_181348 (4102-4348)
               

               
               4-203, gnl|panTro1|chr6 (136998874-136999261)
               

               
               4-203, gnl|rheMac2|chr3 (172646138-172646526)
               

               
               4-203, gnl|rn3|chr4 (62535212-62535542)
               


               
               252-645, gnl|bosTau2|chr4 (54215351-54215740)
               

               
               252-645, gnl|Hg17|chr7 (134307540-134307893)
               

               
               252-645, gnl|Mm7|chr6 (34804731-34805059)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               fat (0.294855)
               

               
               cag (0.151194)
               

               
               cov (0.132153)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.294855)
               

               
               cag (0.151194)
               

               
               cov (0.132153)

	4-203, gnl\|bosTau2\|chr4 (54215126-54215326)
	4-203, gnl\|canFam2\|chr16 (15949218-15948826)
	4-203, gnl\|dasNov1\|scaffold_4030 (29030-28594)
	4-203, gnl\|hg17\|chr7 (134307035-134307422)
	4-203, gnl\|Hg17\|chr7 (134307266-134307513)
	4-203, gnl\|mm7\|chr6 (34804355-34804669)
	4-203, gnl\|oryCun1\|scaffold_181348 (4102-4348)
	4-203, gnl\|panTro1\|chr6 (136998874-136999261)
	4-203, gnl\|rheMac2\|chr3 (172646138-172646526)
	4-203, gnl\|rn3\|chr4 (62535212-62535542)

	252-645, gnl\|bosTau2\|chr4 (54215351-54215740)
	252-645, gnl\|Hg17\|chr7 (134307540-134307893)
	252-645, gnl\|Mm7\|chr6 (34804731-34805059)