Non-Coding RNA Search

Ss1.1-uFN-UNL-P-FN-bv-f-11-0-UNL.s1.3

Sequence:


               
               GCCTTATCCCTGTGCTGCTGCAGCACCGGCTTCGCCCACCCCCCGAAGAGACCTATGCCC
TGCACCGAAAGCTGGCAGGGGCCTTCCTGGCCTGCTCCCGCCTCCGTGCCCACATTGCCT
GCCGGGACCTCTTCCAGGACACCTACCACCGCTACTGGGCCAGTCGCCAGGCGTAGCCAC
CACCCAAAGCCTCTTGACCAGAGGGGATGTCTGCTCAGACCCCTCAGAGAGCTCCATCTC
TCTCAGGGACTCCAGCCCCACGGCAGGCCATCCCCTGCTATGAGGCCTCCTTCCCACGCT
GCTCCAGCTCTGGGGACCCCGCCCTTGGGCTTCCCAGTCTTGCCTAGCTCCCTGGCTCAC
CCAGGGCTGGGGAACCCCGGGACTAGGGAACTCCCAGCTTCATGGCACCATATCCTGCTC
TCCCCACTGCGAAGGGGGCATGTGGGCACTCTATCCAGATATGAATTTGTTTCTGCCAAC
ATTTGAGAAAGCCTTAGGCCCCTGTGCACTGCCATCGCGGAGAACCAGACACATCCTGAG
AGGGAGTCCCTCACCTCGGCCTCAGGTCTCCCACAGATGTGGCCAGTGAAAGAGGAGAGG
CGGTGGGTGGTGGGGGCAGCCTTCACCTTTGCCTCCCTCACTCCCGCACCAGCTGCCTTC
TCCCCACTTCCATCCTCTCTGTGTGGTGGGGAGGGCATGGGGGTGAGATTAAACTTTTAG
TCCTAATAAAAGTGGCCCTCCCCTTCAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTTATCCCTGTGCTGCTGCAGCACCGGCTTCGCCCACCCCCCGAAGAGACCTATGCCC
TGCACCGAAAGCTGGCAGGGGCCTTCCTGGCCTGCTCCCGCCTCCGTGCCCACATTGCCT
GCCGGGACCTCTTCCAGGACACCTACCACCGCTACTGGGCCAGTCGCCAGGCGTAGCCAC
CACCCAAAGCCTCTTGACCAGAGGGGATGTCTGCTCAGACCCCTCAGAGAGCTCCATCTC
TCTCAGGGACTCCAGCCCCACGGCAGGCCATCCCCTGCTATGAGGCCTCCTTCCCACGCT
GCTCCAGCTCTGGGGACCCCGCCCTTGGGCTTCCCAGTCTTGCCTAGCTCCCTGGCTCAC
CCAGGGCTGGGGAACCCCGGGACTAGGGAACTCCCAGCTTCATGGCACCATATCCTGCTC
TCCCCACTGCGAAGGGGGCATGTGGGCACTCTATCCAGATATGAATTTGTTTCTGCCAAC
ATTTGAGAAAGCCTTAGGCCCCTGTGCACTGCCATCGCGGAGAACCAGACACATCCTGAG
AGGGAGTCCCTCACCTCGGCCTCAGGTCTCCCACAGATGTGGCCAGTGAAAGAGGAGAGG
CGGTGGGTGGTGGGGGCAGCCTTCACCTTTGCCTCCCTCACTCCCGCACCAGCTGCCTTC
TCCCCACTTCCATCCTCTCTGTGTGGTGGGGAGGGCATGGGGGTGAGATTAAACTTTTAG
TCCTAATAAAAGTGGCCCTCCCCTTCAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               196-332, - strand, RNAz p=0.999995
               

               
               534-723, + strand, RNAz p=0.996918

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               196-332, - strand, RNAz p=0.999995
               

               
               534-723, + strand, RNAz p=0.996918

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               598-726, + strand, RNAmicro p=0.969449
               

               
               257-377, - strand, RNAmicro p=0.952868

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               598-726, + strand, RNAmicro p=0.969449
               

               
               257-377, - strand, RNAmicro p=0.952868

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC027473, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC027473, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-332, gnl|bosTau2|chr18 (45413154-45412841)
               

               
               1-332, gnl|Hg17|chr19 (45890012-45889629)
               

               
               1-332, gnl|Mm7|chr7 (24176188-24176491)
               


               
               379-746, gnl|bosTau2|chr18 (45412840-45412471)
               

               
               379-746, gnl|Hg17|chr19 (45889628-45889275)
               

               
               379-746, gnl|Mm7|chr7 (24176492-24176804)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-332, gnl|bosTau2|chr18 (45413154-45412841)
               

               
               1-332, gnl|Hg17|chr19 (45890012-45889629)
               

               
               1-332, gnl|Mm7|chr7 (24176188-24176491)
               


               
               379-746, gnl|bosTau2|chr18 (45412840-45412471)
               

               
               379-746, gnl|Hg17|chr19 (45889628-45889275)
               

               
               379-746, gnl|Mm7|chr7 (24176492-24176804)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               cag (0.302389)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               hyp (0.142837)
               

               
               cly (0.120642)
               

               
               med (0.116252)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.302389)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               hyp (0.142837)
               

               
               cly (0.120642)
               

               
               med (0.116252)

	196-332, - strand, RNAz p=0.999995
	534-723, + strand, RNAz p=0.996918

	598-726, + strand, RNAmicro p=0.969449
	257-377, - strand, RNAmicro p=0.952868

	1-332, gnl\|bosTau2\|chr18 (45413154-45412841)
	1-332, gnl\|Hg17\|chr19 (45890012-45889629)
	1-332, gnl\|Mm7\|chr7 (24176188-24176491)

	379-746, gnl\|bosTau2\|chr18 (45412840-45412471)
	379-746, gnl\|Hg17\|chr19 (45889628-45889275)
	379-746, gnl\|Mm7\|chr7 (24176492-24176804)

	cag (0.302389)
	col (0.195008)
	nep (0.183925)
	hyp (0.142837)
	cly (0.120642)
	med (0.116252)